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I've been using your package with success in the past, but since this last update i get the following error when running:
shifter --image=guigolab/ggsashimi:latest /ggsashimi.py --help
Traceback (most recent call last):
File "/ggsashimi.py", line 8, in <module>
import pysam
File "/usr/local/lib/python3.8/dist-packages/pysam/__init__.py", line 5, in <module>
from pysam.libchtslib import *
ImportError: libz-a147dcb0.so.1.2.3: cannot open shared object file: No such file or directory
When i enter in the interactive mode, i run without any problems:
docker run guigolab/ggsashimi --help
Traceback (most recent call last):
File "/ggsashimi.py", line 8, in <module>
import pysam
File "/usr/local/lib/python3.8/dist-packages/pysam/__init__.py", line 5, in <module>
from pysam.libchtslib import *
ImportError: liblzma-75668d9c.so.0.0.0: cannot open shared object file: No such file or directory
Hi,
I've been using your package with success in the past, but since this last update i get the following error when running:
When i enter in the interactive mode, i run without any problems:
Any possibility to take a look into this ?
Best regards,
Pedro
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