Functional Enrichment Analysis and Network Construction
PS: EnrichR are not supported any more. Please use the richR("https://www.github.com/guokai8/richR")
EnrichR is a package can be used for functional enrichment analysis and network construction based on enrichment analysis results. It supported almost all species pubished by ENSEMBL and included with Bioconductor. Now the EnrichR provide function to direct download annotation dataset from the MsigDB.
R>2.15
library(devtools)
install_github("guokai8/EnrichR")
library(EnrichR)
More detail please see vignette
vignette("EnrichR")
If you want tranform ID from one type another type("SYMBOL"->"ENSEMBL")
idconvert(keys=vector_of_symbols,species="human",fkeytype= "SYMBOL",tkeytype="ENSEMBL")
If you want have more details include input data and enrichment results
getdetail(enrichres,input_data)
I still working on this package and will add more functions here.
For any questions please contact guokai8@gmail.com