{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":398963853,"defaultBranch":"main","name":"scripts","ownerLogin":"gxelab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-08-23T03:38:34.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/86507044?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1705630949.0","currentOid":""},"activityList":{"items":[{"before":"0bee83ad78e2e1ee7826be71fcf97031c1eac4c2","after":"899061fcc7fae52e71401099e92666a60e9922ae","ref":"refs/heads/main","pushedAt":"2024-03-26T14:54:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"fixed a bug when indexing stop codon","shortMessageHtmlLink":"fixed a bug when indexing stop codon"}},{"before":"e79d9ccb4b88143cbb235d4e75f029e343f33461","after":"0bee83ad78e2e1ee7826be71fcf97031c1eac4c2","ref":"refs/heads/main","pushedAt":"2024-03-20T10:01:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"suppress output if only ORF in refsp","shortMessageHtmlLink":"suppress output if only ORF in refsp"}},{"before":"3a9515af2e2197a9b0687b56e7b523c3441ac9b4","after":"e79d9ccb4b88143cbb235d4e75f029e343f33461","ref":"refs/heads/main","pushedAt":"2024-03-20T08:20:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"also proint tree for orf align","shortMessageHtmlLink":"also proint tree for orf align"}},{"before":"157a974af95b1b1020d1af67c8baca3e778e1ed6","after":"3a9515af2e2197a9b0687b56e7b523c3441ac9b4","ref":"refs/heads/main","pushedAt":"2024-03-20T06:26:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"write all complete orfs or those under the origin node","shortMessageHtmlLink":"write all complete orfs or those under the origin node"}},{"before":"b1a3cad89a80f0ab035e6de7efca71fcca8495eb","after":"157a974af95b1b1020d1af67c8baca3e778e1ed6","ref":"refs/heads/main","pushedAt":"2024-03-20T06:20:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"fix none type error","shortMessageHtmlLink":"fix none type error"}},{"before":"75242be3696eff242297c1c2609640157dc1362e","after":"b1a3cad89a80f0ab035e6de7efca71fcca8495eb","ref":"refs/heads/main","pushedAt":"2024-01-27T06:10:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"vcf tidy with pysam","shortMessageHtmlLink":"vcf tidy with pysam"}},{"before":"6f61e5a90d2d2560ce4327204bc83ac393c3f1da","after":"75242be3696eff242297c1c2609640157dc1362e","ref":"refs/heads/main","pushedAt":"2024-01-20T06:53:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"mock MAF for phylocsf++","shortMessageHtmlLink":"mock MAF for phylocsf++"}},{"before":"7cb6476c76992a4f3f746c051858dac032c8145d","after":"6f61e5a90d2d2560ce4327204bc83ac393c3f1da","ref":"refs/heads/main","pushedAt":"2024-01-19T02:26:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"leity18","name":"Leity","path":"/leity18","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124331524?s=80&v=4"},"commit":{"message":"Delete orf_origin.py and replace it with orf_bls.py.","shortMessageHtmlLink":"Delete orf_origin.py and replace it with orf_bls.py."}},{"before":"f26fc1222ce3a732e4fe9bd2fda03519bb54f4ce","after":"7cb6476c76992a4f3f746c051858dac032c8145d","ref":"refs/heads/main","pushedAt":"2024-01-19T02:22:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"leity18","name":"Leity","path":"/leity18","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124331524?s=80&v=4"},"commit":{"message":"get the BLS score for each ncORF","shortMessageHtmlLink":"get the BLS score for each ncORF"}},{"before":"f6f203fba2300e37b54266eb66d9eeced5ba88bd","after":"f26fc1222ce3a732e4fe9bd2fda03519bb54f4ce","ref":"refs/heads/main","pushedAt":"2023-12-13T12:56:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"fix bugs  when extending regions","shortMessageHtmlLink":"fix bugs when extending regions"}},{"before":"ac76e59b07ebeeaeb63da8a02d7bb6c50664feac","after":"f6f203fba2300e37b54266eb66d9eeced5ba88bd","ref":"refs/heads/main","pushedAt":"2023-12-13T03:14:50.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"Merge branch 'main' of github.com:gxelab/scripts","shortMessageHtmlLink":"Merge branch 'main' of github.com:gxelab/scripts"}},{"before":"80cfe33e5869bad63e9ff764aa63f8b08c3a0133","after":"ac76e59b07ebeeaeb63da8a02d7bb6c50664feac","ref":"refs/heads/main","pushedAt":"2023-09-27T06:32:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"ignore vscode project settings","shortMessageHtmlLink":"ignore vscode project settings"}},{"before":"c215c9e30bf33c72623bfe5552c721d167eb7b55","after":"80cfe33e5869bad63e9ff764aa63f8b08c3a0133","ref":"refs/heads/main","pushedAt":"2023-08-25T09:03:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"read cellbender hdf5","shortMessageHtmlLink":"read cellbender hdf5"}},{"before":"1e8f15e03192864b419fe72739278761d4cab737","after":"c215c9e30bf33c72623bfe5552c721d167eb7b55","ref":"refs/heads/main","pushedAt":"2023-07-27T07:02:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"infer ORF origination time and manner","shortMessageHtmlLink":"infer ORF origination time and manner"}},{"before":"a9b0d30347bf2f3c5f90a91d1603dc9953e33eac","after":"1e8f15e03192864b419fe72739278761d4cab737","ref":"refs/heads/main","pushedAt":"2023-03-21T13:43:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"user longer flanking region for RRS/RAS","shortMessageHtmlLink":"user longer flanking region for RRS/RAS"}},{"before":"1963180718b30b86cafdb5a5cfa7f01fa2d0af95","after":"a9b0d30347bf2f3c5f90a91d1603dc9953e33eac","ref":"refs/heads/main","pushedAt":"2023-03-20T13:10:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"minor function doc change","shortMessageHtmlLink":"minor function doc change"}},{"before":"6d4771fe63fc4c9d1e5761e7c989453ede94a05d","after":"1963180718b30b86cafdb5a5cfa7f01fa2d0af95","ref":"refs/heads/main","pushedAt":"2023-03-13T08:58:21.488Z","pushType":"push","commitsCount":1,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"update dependency list","shortMessageHtmlLink":"update dependency list"}},{"before":"84e133913dc6613fa19ef183d3a3e3612f77b7ee","after":"6d4771fe63fc4c9d1e5761e7c989453ede94a05d","ref":"refs/heads/main","pushedAt":"2023-03-08T09:43:17.208Z","pushType":"push","commitsCount":2,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"Merge branch 'main' of github.com:gxelab/scripts","shortMessageHtmlLink":"Merge branch 'main' of github.com:gxelab/scripts"}},{"before":"4126226bf521a19c785cc9431b12a933b4a3450f","after":"84e133913dc6613fa19ef183d3a3e3612f77b7ee","ref":"refs/heads/main","pushedAt":"2023-03-08T09:14:16.262Z","pushType":"push","commitsCount":1,"pusher":{"login":"leity18","name":"Leity","path":"/leity18","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124331524?s=80&v=4"},"commit":{"message":"Update psite_ribocode_config.py\n\ngenerate ribocode config for psite bam","shortMessageHtmlLink":"Update psite_ribocode_config.py"}},{"before":"cb670d8270a935ae096a4de5e10612594b866452","after":"4126226bf521a19c785cc9431b12a933b4a3450f","ref":"refs/heads/main","pushedAt":"2023-03-07T14:43:00.492Z","pushType":"push","commitsCount":2,"pusher":{"login":"mt1022","name":"Hong Zhang","path":"/mt1022","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10368050?s=80&v=4"},"commit":{"message":"Merge branch 'main' of github.com:gxelab/scripts","shortMessageHtmlLink":"Merge branch 'main' of github.com:gxelab/scripts"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wMy0yNlQxNDo1NDo1NC4wMDAwMDBazwAAAAQfwE9C","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wMy0yNlQxNDo1NDo1NC4wMDAwMDBazwAAAAQfwE9C","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0wMy0wN1QxNDo0MzowMC40OTIwNDZazwAAAAL-RiF6"}},"title":"Activity · gxelab/scripts"}