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Fill in the gaps to cover the most basic needs of a bfx pipeline #451

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armish opened this issue Apr 19, 2017 · 0 comments

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enhancement target library

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armish commented Apr 19, 2017

Following up on @julia326 talk, might worth looking into these tools and see whether we can get them into biokepi:

Variant annotation
1. snpEff
2. or extend varcode to allow VCF annotation
Structural variant calling
1. DELLY
2. LUMPY
Differential expression
1. Ballgown

armish added enhancement target library labels

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