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setup.py
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setup.py
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from setuptools import setup
import os
# read the contents of your README file
with open('README.md') as f:
long_description = f.read()
print(long_description)
print("""
*******************************************************************
This Source Code Form is subject to the terms of the Mozilla Public
License, v. 2.0. If a copy of the MPL was not distributed with this
file, You can obtain one at http://mozilla.org/MPL/2.0/.
(c) 2017 Haotian Teng
*******************************************************************
""")
install_requires=[
'h5py>=2.7.0',
'mappy>=2.10.0',
'numpy>=1.13.3',
'statsmodels>=0.8.0',
'tqdm>=4.23.0',
'scipy>=1.0.1',
'biopython>=1.73',
'packaging>=18.0'
]
extras_require={
"tf": ["tensorflow==1.15.0"],
"tf_gpu": ["tensorflow-gpu==1.15.0"],
}
exec(open('chiron/_version.py').read())
setup(
name = 'chiron',
packages = ['chiron'],
version = __version__,
include_package_data=True,
description = 'A deep neural network basecaller for nanopore sequencing.',
author = 'Haotian Teng',
author_email = 'havens.teng@gmail.com',
url = 'https://github.com/haotianteng/chiron',
download_url = 'https://github.com/haotianteng/Chiron/archive/0.6.tar.gz',
keywords = ['basecaller', 'nanopore', 'sequencing','neural network'],
license="MPL 2.0",
classifiers = ['License :: OSI Approved :: Mozilla Public License 2.0 (MPL 2.0)'],
install_requires=install_requires,
extras_require=extras_require,
entry_points={'console_scripts':['chiron=chiron.entry:main'],},
long_description=long_description,
long_description_content_type='text/markdown',
)