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run_seq_labeling.py
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run_seq_labeling.py
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# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""BERT finetuning runner."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import collections
import csv
import os
import datetime
import tensorflow as tf
import modeling
import optimization
import custom_optimization
import tokenization
from tensorflow.python.distribute.cross_device_ops import AllReduceCrossDeviceOps
import tensorflow as tf
from tensorflow.python.estimator.run_config import RunConfig
from tensorflow.python.estimator.estimator import Estimator
flags = tf.flags
FLAGS = flags.FLAGS
# Required parameters
flags.DEFINE_string(
"data_dir", None,
"The input data dir. Should contain the .tsv files (or other data files) "
"for the task.")
flags.DEFINE_string(
"bert_config_file", None,
"The config json file corresponding to the pre-trained BERT model. "
"This specifies the model architecture.")
flags.DEFINE_string("task_name", None, "The name of the task to train.")
flags.DEFINE_string("vocab_file", None,
"The vocabulary file that the BERT model was trained on.")
flags.DEFINE_string(
"output_dir", None,
"The output directory where the model checkpoints will be written.")
# Other parameters
flags.DEFINE_string(
"init_checkpoint", None,
"Initial checkpoint (usually from a pre-trained BERT model).")
flags.DEFINE_bool(
"do_lower_case", True,
"Whether to lower case the input text. Should be True for uncased "
"models and False for cased models.")
flags.DEFINE_integer(
"max_seq_length", 128,
"The maximum total input sequence length after WordPiece tokenization. "
"Sequences longer than this will be truncated, and sequences shorter "
"than this will be padded.")
flags.DEFINE_bool("do_train", False, "Whether to run training.")
flags.DEFINE_bool("do_eval", False, "Whether to run eval on the dev set.")
flags.DEFINE_bool(
"do_predict", False,
"Whether to run the model in inference mode on the test set.")
flags.DEFINE_bool(
"save_for_serving", False,
"Whether to save the model for tensorflow serving.")
flags.DEFINE_integer("train_batch_size", 32, "Total batch size for training.")
flags.DEFINE_integer("eval_batch_size", 8, "Total batch size for eval.")
flags.DEFINE_integer("predict_batch_size", 8, "Total batch size for predict.")
flags.DEFINE_float("learning_rate", 5e-5, "The initial learning rate for Adam.")
flags.DEFINE_float("num_train_epochs", 10.0,
"Total number of training epochs to perform.")
flags.DEFINE_float(
"warmup_proportion", 0.1,
"Proportion of training to perform linear learning rate warmup for. "
"E.g., 0.1 = 10% of training.")
flags.DEFINE_integer("save_checkpoints_steps", 10000,
"How often to save the model checkpoint.")
flags.DEFINE_integer("iterations_per_loop", 10000,
"How many steps to make in each estimator call.")
flags.DEFINE_bool("use_tpu", False, "Whether to use TPU or GPU/CPU.")
tf.flags.DEFINE_string(
"tpu_name", None,
"The Cloud TPU to use for training. This should be either the name "
"used when creating the Cloud TPU, or a grpc://ip.address.of.tpu:8470 "
"url.")
tf.flags.DEFINE_string(
"tpu_zone", None,
"[Optional] GCE zone where the Cloud TPU is located in. If not "
"specified, we will attempt to automatically detect the GCE project from "
"metadata.")
tf.flags.DEFINE_string(
"gcp_project", None,
"[Optional] Project name for the Cloud TPU-enabled project. If not "
"specified, we will attempt to automatically detect the GCE project from "
"metadata.")
tf.flags.DEFINE_string("master", None, "[Optional] TensorFlow master URL.")
flags.DEFINE_integer(
"num_tpu_cores", 8,
"Only used if `use_tpu` is True. Total number of TPU cores to use.")
# Custom Config
flags.DEFINE_bool("use_gpu", False, "Whether to use GPU.")
flags.DEFINE_integer(
"num_gpu_cores", 0,
"Only used if `use_gpu` is True. Total number of GPU cores to use."
)
flags.DEFINE_bool("use_fp16", False, "Whether to use fp16.")
class InputExample(object):
"""A single training/test example for simple sequence classification."""
def __init__(self, guid, tokens_a, labels):
"""Constructs a InputExample.
Args:
guid: Unique id for the example.
"""
self.guid = guid
self.tokens_a = tokens_a
self.labels = labels
class InputFeatures(object):
"""A single set of features of data."""
def __init__(self, input_ids, input_mask, segment_ids, label_ids, output_mask, seq_len):
self.input_ids = input_ids
self.input_mask = input_mask
self.segment_ids = segment_ids
self.label_ids = label_ids
self.output_mask = output_mask
self.seq_len = seq_len
class DataProcessor(object):
"""Base class for data converters for sequence classification data sets."""
def get_train_examples(self, data_dir):
"""Gets a collection of `InputExample`s for the train set."""
raise NotImplementedError()
def get_dev_examples(self, data_dir):
"""Gets a collection of `InputExample`s for the dev set."""
raise NotImplementedError()
def get_test_examples(self, data_dir):
"""Gets a collection of `InputExample`s for prediction."""
raise NotImplementedError()
def get_labels(self):
"""Gets the list of labels for this data set."""
raise NotImplementedError()
@classmethod
def _read_tsv(cls, input_file, quotechar=None):
"""Reads a tab separated value file."""
with tf.gfile.Open(input_file, "r") as f:
reader = csv.reader(f, delimiter="\t", quotechar=quotechar)
lines = []
for line in reader:
lines.append(line)
return lines
class PunctProcessor(DataProcessor):
"""Processor for the NamedEntity data set."""
def get_train_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")
def get_dev_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "dev.tsv")), "dev")
def get_test_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "test.tsv")), "test")
def get_labels(self):
"""See base class."""
return ["C", "P", "Q", "E", "D", "O"]
def _create_examples(self, lines, set_type):
"""Creates examples for the training and dev sets."""
examples = []
for (i, line) in enumerate(lines):
# Ignore the first line.
# if i == 0:
# continue
guid = "%s-%s" % (set_type, i)
tokens_a = tokenization.convert_to_unicode(line[0])
if set_type == "test":
labels = ' '.join(["0"] * len(tokens_a.split()))
else:
labels = tokenization.convert_to_unicode(line[1])
examples.append(
InputExample(guid=guid, tokens_a=tokens_a, labels=labels))
return examples
class NormProcessor(DataProcessor):
"""Processor for the NamedEntity data set."""
def get_train_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")
def get_dev_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "dev.tsv")), "dev")
def get_test_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "test.tsv")), "test")
def get_labels(self):
"""See base class."""
return ["O", "I-n", "B-n", "I-c", "I-inter_n", "I-inter_d", "I-d", "B-c", "B-inter_n", "I-s", "B-d", "I-t",
"I-per", "B-sil", "I-tel", "I-temp", "I-alter", "I-frac", "I-form", "B-inter_d", "B-per", "B-s",
"B-frac", "B-t", "B-temp", "I-inter_t", "I-inter_temp", "B-alter", "B-tel", "I-fraction", "B-form",
"I-sil", "I-inter_c", "I-inter_per", "B-fraction", "I-inter_frac", "B-inter_t", "B-inter",
"B-inter_temp", "I-inter_s", "B-inter_c", "I-inter_fraction", "I-block", "I-inter", "B-inter_frac",
"B-inter_per", "B-block", "B-inter_s"]
def _create_examples(self, lines, set_type):
"""Creates examples for the training and dev sets."""
examples = []
for (i, line) in enumerate(lines):
# Ignore the first line.
# if i == 0:
# continue
guid = "%s-%s" % (set_type, i)
tokens_a = tokenization.convert_to_unicode(line[0])
if set_type == "test":
labels = ' '.join(["0"] * len(tokens_a.split()))
else:
labels = tokenization.convert_to_unicode(line[1])
examples.append(
InputExample(guid=guid, tokens_a=tokens_a, labels=labels))
return examples
class NamedEntityProcessor(DataProcessor):
"""Processor for the NamedEntity data set."""
def get_train_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")
def get_dev_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "dev.tsv")), "dev")
def get_test_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "test.tsv")), "test")
def get_labels(self):
"""See base class."""
return ["B-o", "M-o", "E-o", "S-o"]
def _create_examples(self, lines, set_type):
"""Creates examples for the training and dev sets."""
examples = []
for (i, line) in enumerate(lines):
# Ignore the first line.
# if i == 0:
# continue
guid = "%s-%s" % (set_type, i)
tokens_a = tokenization.convert_to_unicode(line[0])
if set_type == "test":
labels = ' '.join(["0"] * len(tokens_a.split()))
else:
labels = tokenization.convert_to_unicode(line[1])
examples.append(
InputExample(guid=guid, tokens_a=tokens_a, labels=labels))
return examples
def convert_single_example(ex_index, example, label_list, max_seq_length,
tokenizer):
"""Converts a single `InputExample` into a single `InputFeatures`."""
label_map = {}
for (i, label) in enumerate(label_list):
label_map[label] = i
tokens_a = example.tokens_a.split()
labels = example.labels.split()
assert (len(tokens_a) == len(labels))
# Account for [CLS] and [SEP] with "- 2"
if len(tokens_a) > max_seq_length - 2:
tokens_a = tokens_a[0:(max_seq_length - 2)]
labels = labels[0:(max_seq_length - 2)]
# The convention in BERT is:
# (a) For sequence pairs:
# tokens: [CLS] is this jack ##son ##ville ? [SEP] no it is not . [SEP]
# type_ids: 0 0 0 0 0 0 0 0 1 1 1 1 1 1
# (b) For single sequences:
# tokens: [CLS] the dog is hairy . [SEP]
# type_ids: 0 0 0 0 0 0 0
#
# Where "type_ids" are used to indicate whether this is the first
# sequence or the second sequence. The embedding vectors for `type=0` and
# `type=1` were learned during pre-training and are added to the wordpiece
# embedding vector (and position vector). This is not *strictly* necessary
# since the [SEP] token unambiguously separates the sequences, but it makes
# it easier for the model to learn the concept of sequences.
#
# For classification tasks, the first vector (corresponding to [CLS]) is
# used as as the "sentence vector". Note that this only makes sense because
# the entire model is fine-tuned.
tokens = []
label_ids = []
segment_ids = []
seq_len = len(tokens_a)
tokens.append("[CLS]")
segment_ids.append(0)
label_ids.append(0)
for token, label in zip(tokens_a, labels):
tokens.append(token)
segment_ids.append(0)
if label in label_map:
label_ids.append(label_map[label])
else:
label_ids.append(0)
tokens.append("[SEP]")
segment_ids.append(0)
label_ids.append(0)
input_ids = tokenizer.convert_tokens_to_ids(tokens)
# The mask has 1 for real tokens and 0 for padding tokens. Only real
# tokens are attended to.
input_mask = [1] * len(input_ids)
output_mask = [0] + [1] * (len(input_ids) - 2) + [0]
# Zero-pad up to the sequence length.
while len(input_ids) < max_seq_length:
input_ids.append(0)
input_mask.append(0)
segment_ids.append(0)
label_ids.append(0)
output_mask.append(0)
assert len(input_ids) == max_seq_length
assert len(input_mask) == max_seq_length
assert len(segment_ids) == max_seq_length
assert len(label_ids) == max_seq_length
assert len(output_mask) == max_seq_length
if ex_index < 5:
tf.logging.info("*** Example ***")
tf.logging.info("guid: %s" % (example.guid))
tf.logging.info("tokens: %s" % " ".join(
[tokenization.printable_text(x) for x in tokens]))
tf.logging.info("input_ids: %s" % " ".join([str(x) for x in input_ids]))
tf.logging.info("input_mask: %s" % " ".join([str(x) for x in input_mask]))
tf.logging.info("segment_ids: %s" % " ".join([str(x) for x in segment_ids]))
tf.logging.info("label_ids: %s" % " ".join([str(x) for x in label_ids]))
tf.logging.info("output_mask: %s" % " ".join([str(x) for x in output_mask]))
feature = InputFeatures(
input_ids=input_ids,
input_mask=input_mask,
segment_ids=segment_ids,
label_ids=label_ids,
output_mask=output_mask,
seq_len=seq_len)
return feature
def file_based_convert_examples_to_features(
examples, label_list, max_seq_length, tokenizer, output_file):
"""Convert a set of `InputExample`s to a TFRecord file."""
writer = tf.python_io.TFRecordWriter(output_file)
for (ex_index, example) in enumerate(examples):
if ex_index % 10000 == 0:
tf.logging.info("Writing example %d of %d" % (ex_index, len(examples)))
feature = convert_single_example(ex_index, example, label_list,
max_seq_length, tokenizer)
def create_int_feature(values):
f = tf.train.Feature(int64_list=tf.train.Int64List(value=list(values)))
return f
features = collections.OrderedDict()
features["input_ids"] = create_int_feature(feature.input_ids)
features["input_mask"] = create_int_feature(feature.input_mask)
features["segment_ids"] = create_int_feature(feature.segment_ids)
features["label_ids"] = create_int_feature(feature.label_ids)
features["output_mask"] = create_int_feature(feature.output_mask)
features["seq_len"] = create_int_feature([feature.seq_len])
tf_example = tf.train.Example(features=tf.train.Features(feature=features))
writer.write(tf_example.SerializeToString())
def file_based_input_fn_builder(input_file, seq_length, is_training,
drop_remainder, batch_size):
"""Creates an `input_fn` closure to be passed to TPUEstimator."""
name_to_features = {
"input_ids": tf.FixedLenFeature([seq_length], tf.int64),
"input_mask": tf.FixedLenFeature([seq_length], tf.int64),
"segment_ids": tf.FixedLenFeature([seq_length], tf.int64),
"label_ids": tf.FixedLenFeature([seq_length], tf.int64),
"output_mask": tf.FixedLenFeature([seq_length], tf.int64),
"seq_len": tf.FixedLenFeature([], tf.int64)
}
def _decode_record(record, name_to_features):
"""Decodes a record to a TensorFlow example."""
example = tf.parse_single_example(record, name_to_features)
# tf.Example only supports tf.int64, but the TPU only supports tf.int32.
# So cast all int64 to int32.
for name in list(example.keys()):
t = example[name]
if t.dtype == tf.int64:
t = tf.to_int32(t)
example[name] = t
return example
def input_fn(params):
"""The actual input function."""
# batch_size = params["batch_size"]
# For training, we want a lot of parallel reading and shuffling.
# For eval, we want no shuffling and parallel reading doesn't matter.
d = tf.data.TFRecordDataset(input_file)
if is_training:
d = d.repeat()
d = d.shuffle(buffer_size=100)
d = d.apply(
tf.contrib.data.map_and_batch(
lambda record: _decode_record(record, name_to_features),
batch_size=batch_size,
drop_remainder=drop_remainder))
return d
return input_fn
def _truncate_seq_pair(tokens_a, tokens_b, max_length):
"""Truncates a sequence pair in place to the maximum length."""
# This is a simple heuristic which will always truncate the longer sequence
# one token at a time. This makes more sense than truncating an equal percent
# of tokens from each, since if one sequence is very short then each token
# that's truncated likely contains more information than a longer sequence.
while True:
total_length = len(tokens_a) + len(tokens_b)
if total_length <= max_length:
break
if len(tokens_a) > len(tokens_b):
tokens_a.pop()
else:
tokens_b.pop()
def create_model(bert_config, is_training, input_ids, input_mask, segment_ids,
label_ids, output_mask, num_labels, use_one_hot_embeddings, fp16):
"""Creates a classification model."""
comp_type = tf.float16 if fp16 else tf.float32
model = modeling.BertModel(
config=bert_config,
is_training=is_training,
input_ids=input_ids,
input_mask=input_mask,
token_type_ids=segment_ids,
use_one_hot_embeddings=use_one_hot_embeddings,
comp_type=comp_type)
# In the demo, we are doing a simple classification task on the entire
# segment.
#
# If you want to use the token-level output, use model.get_sequence_output()
# instead.
output_layer = model.get_sequence_output()
seq_len = output_layer.shape[-2].value
hidden_size = output_layer.shape[-1].value
output_weights = tf.get_variable(
"output_weights", [num_labels, hidden_size],
initializer=tf.truncated_normal_initializer(stddev=0.02))
output_bias = tf.get_variable(
"output_bias", [num_labels], initializer=tf.zeros_initializer())
with tf.variable_scope("loss"):
if is_training:
# I.e., 0.1 dropout
output_layer = tf.nn.dropout(output_layer, keep_prob=0.9)
output_layer = tf.reshape(output_layer, [-1, hidden_size])
logits = tf.matmul(output_layer, output_weights, transpose_b=True)
logits = tf.nn.bias_add(logits, output_bias)
logits = tf.reshape(logits, [-1, seq_len, num_labels])
log_probs = tf.nn.log_softmax(logits, axis=-1)
predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
mask = tf.expand_dims(output_mask, -1)
log_probs = log_probs * mask
one_hot_labels = tf.one_hot(label_ids, depth=num_labels, dtype=tf.float32)
per_example_loss = -tf.reduce_sum(one_hot_labels * log_probs, axis=-1)
loss = tf.reduce_mean(per_example_loss)
return (loss, per_example_loss, predictions)
def model_fn_builder(bert_config, num_labels, init_checkpoint, learning_rate,
num_train_steps, num_warmup_steps, use_tpu,
use_one_hot_embeddings, use_gpu, num_gpu_cores, fp16):
"""Returns `model_fn` closure for TPUEstimator."""
def model_fn(features, labels, mode, params): # pylint: disable=unused-argument
"""The `model_fn` for TPUEstimator."""
tf.logging.info("*** Features ***")
for name in sorted(features.keys()):
tf.logging.info(" name = %s, shape = %s" % (name, features[name].shape))
input_ids = features["input_ids"]
input_mask = features["input_mask"]
segment_ids = features["segment_ids"]
label_ids = features["label_ids"]
seq_len = features["seq_len"]
output_mask = features["output_mask"]
output_mask_float = tf.to_float(output_mask)
is_training = (mode == tf.estimator.ModeKeys.TRAIN)
(total_loss, per_example_loss, predictions) = create_model(
bert_config, is_training, input_ids, input_mask, segment_ids, label_ids, output_mask_float,
num_labels, use_one_hot_embeddings, fp16)
tvars = tf.trainable_variables()
scaffold_fn = None
if init_checkpoint:
(assignment_map, initialized_variable_names
) = modeling.get_assignment_map_from_checkpoint(tvars, init_checkpoint)
if use_tpu:
def tpu_scaffold():
tf.train.init_from_checkpoint(init_checkpoint, assignment_map)
return tf.train.Scaffold()
scaffold_fn = tpu_scaffold
else:
tf.train.init_from_checkpoint(init_checkpoint, assignment_map)
tf.logging.info("**** Trainable Variables ****")
for var in tvars:
init_string = ""
if var.name in initialized_variable_names:
init_string = ", *INIT_FROM_CKPT*"
tf.logging.info(" name = %s, shape = %s%s", var.name, var.shape,
init_string)
if mode == tf.estimator.ModeKeys.TRAIN:
if use_gpu and int(num_gpu_cores) >= 2:
train_op = custom_optimization.create_optimizer(
total_loss, learning_rate, num_train_steps, num_warmup_steps, fp16=fp16)
output_spec = tf.estimator.EstimatorSpec(
mode=mode,
loss=total_loss,
train_op=train_op,
scaffold=scaffold_fn)
else:
train_op = optimization.create_optimizer(
total_loss, learning_rate, num_train_steps, num_warmup_steps, use_tpu, fp16=fp16)
output_spec = tf.contrib.tpu.TPUEstimatorSpec(
mode=mode,
loss=total_loss,
train_op=train_op,
scaffold_fn=scaffold_fn)
elif mode == tf.estimator.ModeKeys.EVAL:
def metric_fn(per_example_loss, label_ids, predictions, output_mask):
accuracy = tf.metrics.accuracy(label_ids, predictions, output_mask)
loss = tf.metrics.mean(per_example_loss)
return {
"eval_accuracy": accuracy,
"eval_loss": loss,
}
eval_metrics = (metric_fn, [per_example_loss, label_ids, predictions, output_mask])
if use_gpu and int(num_gpu_cores) >= 2:
output_spec = tf.estimator.EstimatorSpec(
mode=mode,
loss=total_loss,
eval_metric_ops=eval_metrics[0](*eval_metrics[1]))
else:
output_spec = tf.contrib.tpu.TPUEstimatorSpec(
mode=mode,
loss=total_loss,
eval_metrics=eval_metrics,
scaffold_fn=scaffold_fn)
else:
predictions = {
"predictions": predictions,
"seq_len": seq_len
}
if use_gpu and int(num_gpu_cores) >= 2:
output_spec = tf.estimator.EstimatorSpec(
mode=mode,
predictions=predictions)
else:
output_spec = tf.contrib.tpu.TPUEstimatorSpec(
mode=mode,
predictions=predictions,
scaffold_fn=scaffold_fn)
return output_spec
return model_fn
def save_for_serving(estimator, serving_dir, seq_length, is_tpu_estimator):
feature_map = {
"input_ids": tf.placeholder(tf.int32, shape=[None, seq_length], name='input_ids'),
"input_mask": tf.placeholder(tf.int32, shape=[None, seq_length], name='input_mask'),
"segment_ids": tf.placeholder(tf.int32, shape=[None, seq_length], name='segment_ids'),
"label_ids": tf.placeholder(tf.int32, shape=[None, seq_length], name='label_ids'),
"output_mask": tf.placeholder(tf.int32, shape=[None, seq_length], name='label_ids'),
"seq_len": tf.placeholder(tf.int32, shape=[None], name='label_ids'),
}
serving_input_receiver_fn = tf.estimator.export.build_raw_serving_input_receiver_fn(feature_map)
if is_tpu_estimator:
# REF: https://github.com/google-research/bert/issues/146#issuecomment-441865716
estimator._export_to_tpu = False # this is important
estimator.export_savedmodel(serving_dir,
serving_input_receiver_fn,
strip_default_attrs=True)
def main(_):
tf.logging.set_verbosity(tf.logging.INFO)
processors = {
"named_entity": NamedEntityProcessor,
"punct": PunctProcessor,
"norm": NormProcessor
}
if not FLAGS.do_train and not FLAGS.do_eval and not FLAGS.do_predict:
raise ValueError(
"At least one of `do_train`, `do_eval` or `do_predict' must be True.")
bert_config = modeling.BertConfig.from_json_file(FLAGS.bert_config_file)
if FLAGS.max_seq_length > bert_config.max_position_embeddings:
raise ValueError(
"Cannot use sequence length %d because the BERT model "
"was only trained up to sequence length %d" %
(FLAGS.max_seq_length, bert_config.max_position_embeddings))
tf.gfile.MakeDirs(FLAGS.output_dir)
task_name = FLAGS.task_name.lower()
if task_name not in processors:
raise ValueError("Task not found: %s" % (task_name))
processor = processors[task_name]()
label_list = processor.get_labels()
tokenizer = tokenization.FullTokenizer(
vocab_file=FLAGS.vocab_file, do_lower_case=FLAGS.do_lower_case)
tpu_cluster_resolver = None
if FLAGS.use_tpu and FLAGS.tpu_name:
tpu_cluster_resolver = tf.contrib.cluster_resolver.TPUClusterResolver(
FLAGS.tpu_name, zone=FLAGS.tpu_zone, project=FLAGS.gcp_project)
is_per_host = tf.contrib.tpu.InputPipelineConfig.PER_HOST_V2
if FLAGS.use_gpu and int(FLAGS.num_gpu_cores) >= 2:
tf.logging.info("Use normal RunConfig")
dist_strategy = tf.contrib.distribute.MirroredStrategy(
num_gpus=FLAGS.num_gpu_cores,
cross_device_ops=AllReduceCrossDeviceOps('nccl', num_packs=FLAGS.num_gpu_cores),
)
log_every_n_steps = 8
run_config = RunConfig(
train_distribute=dist_strategy,
eval_distribute=dist_strategy,
log_step_count_steps=log_every_n_steps,
model_dir=FLAGS.output_dir,
save_checkpoints_steps=FLAGS.save_checkpoints_steps)
else:
tf.logging.info("Use TPURunConfig")
run_config = tf.contrib.tpu.RunConfig(
cluster=tpu_cluster_resolver,
master=FLAGS.master,
model_dir=FLAGS.output_dir,
save_checkpoints_steps=FLAGS.save_checkpoints_steps,
tpu_config=tf.contrib.tpu.TPUConfig(
iterations_per_loop=FLAGS.iterations_per_loop,
num_shards=FLAGS.num_tpu_cores,
per_host_input_for_training=is_per_host))
train_examples = None
num_train_steps = None
num_warmup_steps = None
if FLAGS.do_train:
train_examples = processor.get_train_examples(FLAGS.data_dir)
num_train_steps = int(
len(train_examples) / FLAGS.train_batch_size * FLAGS.num_train_epochs)
num_warmup_steps = int(num_train_steps * FLAGS.warmup_proportion)
init_checkpoint = FLAGS.init_checkpoint
model_fn = model_fn_builder(
bert_config=bert_config,
num_labels=len(label_list),
init_checkpoint=init_checkpoint,
learning_rate=FLAGS.learning_rate,
num_train_steps=num_train_steps,
num_warmup_steps=num_warmup_steps,
use_tpu=FLAGS.use_tpu,
use_one_hot_embeddings=FLAGS.use_tpu,
use_gpu=FLAGS.use_gpu,
num_gpu_cores=FLAGS.num_gpu_cores,
fp16=FLAGS.use_fp16)
# If TPU is not available, this will fall back to normal Estimator on CPU
# or GPU.
if FLAGS.use_gpu and int(FLAGS.num_gpu_cores) >= 2:
tf.logging.info("Use normal Estimator")
estimator = Estimator(
model_fn=model_fn,
params={},
config=run_config)
else:
tf.logging.info("Use TPUEstimator")
estimator = tf.contrib.tpu.TPUEstimator(
use_tpu=FLAGS.use_tpu,
model_fn=model_fn,
config=run_config,
train_batch_size=FLAGS.train_batch_size,
eval_batch_size=FLAGS.eval_batch_size,
predict_batch_size=FLAGS.predict_batch_size)
if FLAGS.do_train:
train_file = os.path.join(FLAGS.output_dir, "train.tf_record")
file_based_convert_examples_to_features(
train_examples, label_list, FLAGS.max_seq_length, tokenizer, train_file)
tf.logging.info("***** Running training *****")
tf.logging.info(" Num examples = %d", len(train_examples))
tf.logging.info(" Batch size = %d", FLAGS.train_batch_size)
tf.logging.info(" Num steps = %d", num_train_steps)
train_input_fn = file_based_input_fn_builder(
input_file=train_file,
seq_length=FLAGS.max_seq_length,
is_training=True,
drop_remainder=True,
batch_size=FLAGS.train_batch_size)
estimator.train(input_fn=train_input_fn, max_steps=num_train_steps)
if FLAGS.do_eval:
eval_examples = processor.get_dev_examples(FLAGS.data_dir)
eval_file = os.path.join(FLAGS.output_dir, "eval.tf_record")
file_based_convert_examples_to_features(
eval_examples, label_list, FLAGS.max_seq_length, tokenizer, eval_file)
tf.logging.info("***** Running evaluation *****")
tf.logging.info(" Num examples = %d", len(eval_examples))
tf.logging.info(" Batch size = %d", FLAGS.eval_batch_size)
# This tells the estimator to run through the entire set.
eval_steps = None
# However, if running eval on the TPU, you will need to specify the
# number of steps.
if FLAGS.use_tpu:
# Eval will be slightly WRONG on the TPU because it will truncate
# the last batch.
eval_steps = int(len(eval_examples) / FLAGS.eval_batch_size)
eval_drop_remainder = True if FLAGS.use_tpu else False
eval_input_fn = file_based_input_fn_builder(
input_file=eval_file,
seq_length=FLAGS.max_seq_length,
is_training=False,
drop_remainder=eval_drop_remainder,
batch_size=FLAGS.eval_batch_size)
result = estimator.evaluate(input_fn=eval_input_fn, steps=eval_steps)
output_eval_file = os.path.join(FLAGS.output_dir, "eval_results.txt")
with tf.gfile.GFile(output_eval_file, "w") as writer:
tf.logging.info("***** Eval results *****")
for key in sorted(result.keys()):
tf.logging.info(" %s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
if FLAGS.do_predict:
predict_examples = processor.get_test_examples(FLAGS.data_dir)
predict_file = os.path.join(FLAGS.output_dir, "predict.tf_record")
file_based_convert_examples_to_features(predict_examples, label_list,
FLAGS.max_seq_length, tokenizer,
predict_file)
tf.logging.info("***** Running prediction*****")
tf.logging.info(" Num examples = %d", len(predict_examples))
tf.logging.info(" Batch size = %d", FLAGS.predict_batch_size)
if FLAGS.use_tpu:
# Warning: According to tpu_estimator.py Prediction on TPU is an
# experimental feature and hence not supported here
raise ValueError("Prediction in TPU not supported")
predict_drop_remainder = True if FLAGS.use_tpu else False
predict_input_fn = file_based_input_fn_builder(
input_file=predict_file,
seq_length=FLAGS.max_seq_length,
is_training=False,
drop_remainder=predict_drop_remainder,
batch_size=FLAGS.predict_batch_size)
result = estimator.predict(input_fn=predict_input_fn)
output_predict_file = os.path.join(FLAGS.output_dir, "test_results.tsv")
with tf.gfile.GFile(output_predict_file, "w") as writer:
tf.logging.info("***** Predict results *****")
for item in result:
predictions = item['predictions']
seq_len = item['seq_len']
predictions = predictions[1:seq_len + 1]
labels = []
for pred in predictions:
labels.append(label_list[pred])
writer.write(tokenization.printable_text(' '.join(labels)) + '\n')
if FLAGS.do_train and FLAGS.save_for_serving:
serving_dir = os.path.join(FLAGS.output_dir, 'serving')
is_tpu_estimator = not FLAGS.use_gpu or int(FLAGS.num_gpu_cores) < 2
save_for_serving(estimator, serving_dir, FLAGS.max_seq_length, is_tpu_estimator)
if __name__ == "__main__":
flags.mark_flag_as_required("data_dir")
flags.mark_flag_as_required("task_name")
flags.mark_flag_as_required("vocab_file")
flags.mark_flag_as_required("bert_config_file")
flags.mark_flag_as_required("output_dir")
tf.app.run()