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scripts.nex
107 lines (104 loc) · 3.31 KB
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scripts.nex
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#NEXUS
begin taxa;
dimensions ntax=5;
taxlabels
CBR
Outgroup
SHR
SR
TR
;
end;
begin trees;
tree tnt_1 = [&U] (Outgroup,(TR,(SHR,(CBR,SR))));
end;
begin figtree;
set appearance.backgroundColorAttribute="Default";
set appearance.backgroundColour=#ffffff;
set appearance.branchColorAttribute="User selection";
set appearance.branchColorGradient=false;
set appearance.branchLineWidth=5.0;
set appearance.branchMinLineWidth=0.0;
set appearance.branchWidthAttribute="Fixed";
set appearance.foregroundColour=#000000;
set appearance.hilightingGradient=false;
set appearance.selectionColour=#2d3680;
set branchLabels.colorAttribute="User selection";
set branchLabels.displayAttribute="Branch times";
set branchLabels.fontName="sansserif";
set branchLabels.fontSize=8;
set branchLabels.fontStyle=0;
set branchLabels.isShown=false;
set branchLabels.significantDigits=4;
set layout.expansion=0;
set layout.layoutType="RECTILINEAR";
set layout.zoom=0;
set legend.attribute=null;
set legend.fontSize=10.0;
set legend.isShown=false;
set legend.significantDigits=4;
set nodeBars.barWidth=4.0;
set nodeBars.displayAttribute=null;
set nodeBars.isShown=false;
set nodeLabels.colorAttribute="User selection";
set nodeLabels.displayAttribute="Node ages";
set nodeLabels.fontName="sansserif";
set nodeLabels.fontSize=8;
set nodeLabels.fontStyle=0;
set nodeLabels.isShown=false;
set nodeLabels.significantDigits=4;
set nodeShapeExternal.colourAttribute=null;
set nodeShapeExternal.isShown=false;
set nodeShapeExternal.minSize=10.0;
set nodeShapeExternal.scaleType=Width;
set nodeShapeExternal.shapeType=Circle;
set nodeShapeExternal.size=4.0;
set nodeShapeExternal.sizeAttribute=null;
set nodeShapeInternal.colourAttribute=null;
set nodeShapeInternal.isShown=false;
set nodeShapeInternal.minSize=10.0;
set nodeShapeInternal.scaleType=Width;
set nodeShapeInternal.shapeType=Circle;
set nodeShapeInternal.size=4.0;
set nodeShapeInternal.sizeAttribute=null;
set polarLayout.alignTipLabels=false;
set polarLayout.angularRange=0;
set polarLayout.rootAngle=0;
set polarLayout.rootLength=100;
set polarLayout.showRoot=true;
set radialLayout.spread=0.0;
set rectilinearLayout.alignTipLabels=false;
set rectilinearLayout.curvature=0;
set rectilinearLayout.rootLength=100;
set scale.offsetAge=0.0;
set scale.rootAge=1.0;
set scale.scaleFactor=1.0;
set scale.scaleRoot=false;
set scaleAxis.automaticScale=true;
set scaleAxis.fontSize=8.0;
set scaleAxis.isShown=false;
set scaleAxis.lineWidth=1.0;
set scaleAxis.majorTicks=1.0;
set scaleAxis.minorTicks=0.5;
set scaleAxis.origin=0.0;
set scaleAxis.reverseAxis=false;
set scaleAxis.showGrid=true;
set scaleBar.automaticScale=true;
set scaleBar.fontSize=10.0;
set scaleBar.isShown=true;
set scaleBar.lineWidth=1.0;
set scaleBar.scaleRange=0.0;
set tipLabels.colorAttribute="User selection";
set tipLabels.displayAttribute="Names";
set tipLabels.fontName="sansserif";
set tipLabels.fontSize=32;
set tipLabels.fontStyle=0;
set tipLabels.isShown=true;
set tipLabels.significantDigits=4;
set trees.order=false;
set trees.orderType="increasing";
set trees.rooting=false;
set trees.rootingType="User Selection";
set trees.transform=false;
set trees.transformType="cladogram";
end;