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install_eigen.txt
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install_eigen.txt
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## Install SuiteSparse
export MKLROOT=/opt/compiler/intel/18.0/mkl;
### Edit SuiteSparse_config/SuiteSparse_config.mk for the location of MKL library
Line 160: BLAS = -L$(MKLROOT)/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lpthread -lm
### if intel compiler is coupled, use:
export CC=icc; export FC=ifort; export F77=ifort; export CMAKE_CXX_COMPILER=icpc; export CMAKE_C_COMPILER=icc
### 5.20. requires gcc>4.9 and corresponding cmake
make config
make
make install INSTALL=/opt/libs/suitesparse/4.5.6
## SuperLU_MT
cp MAKE_INC/make.linux.openmp make.inc; make blaslib; make
## Install eig3
http://bitbucket.org/eigen/eigen/get/3.3.4.tar.gz
cd build; cmake -DCMAKE_INSTALL_PREFIX=/opt/libs/eigen/3.3.4 -DBoost_LIBRARY_DIR=/opt/libs/boost/1.54.0/lib -DBoost_INCLUDE_DIR=/opt/libs/boost/1.54.0/include -DCHOLMOD_INCLUDES=/opt/libs/suitesparse/4.5.6/include -DCHOLMOD_LIBRARIES=/opt/libs/suitesparse/4.5.6/lib/ libcholmod.so -DUMFPACK_INCLUDES=/opt/libs/suitesparse/4.5.6/include -DUMFPACK_LIBRARIES=/opt/libs/suitesparse/4.5.6/lib/ libumfpack.so -DSPQR_INCLUDES=/opt/libs/suitesparse/4.5.6/include -DSPQR_LIBRARIES=/opt/libs/suitesparse/4.5.6/lib/ libspqr.so -DSUPERLU_INCLUDES=/opt/libs/SuperLU/5.2.1/include -DSUPERLU_LIBRARIES=/opt/libs/SuperLU/5.2.1/lib64/libsuperlu.a -DBoost_NO_BOOST_CMAKE=BOOL:ON ..
### Installing SuiteSparse using intel compiler 18
1) sudo yum install gcc-c++-4.8.5-28.el7.x86_64 (note that vector cluster has older version of gcc4.8.5)
2) module load cmake intel18
3) export CC=icc; export FC=ifort; export F77=ifort; export CMAKE_CXX_COMPILER=icpc; export CMAKE_C_COMPILER=icc
4) export MKLROOT=/opt/compiler/intel/18.0/mkl;
5) Edit SuiteSparse_config/SuiteSparse_config.mk for the location of MKL library
Line 160: BLAS = -L$(MKLROOT)/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_intel_t hread -lpthread -lm
Or adjust LD_LIBRARY_PATH and use the default (dynamic link)
Adjust -openmp into -qopenmp
6) make install INSTALL=/opt/libs/SuiteSparse/5.3.0_intel18 CC=icc FC=ifort
7) Mongoose fails to compile and edit CMakeCache.txt at Mongoose for SUITESPARSE_CONFIG_LIBRARY:FILEPATH=/opt/libs/SuiteSparse/5.3.0_intel18/lib/libsuitesparseconfig.so. Repeating 6)
8) In UMFPACK, there might be an error of internal error: 04010002_12240
Then adjust the level of optimization from -O3 to -O1 and manually compile at Lib
icc -D_GNU_SOURCE -mkl -O1 -fexceptions -fPIC -I/usr/nic/compiler/intel/18.0/mkl/include -I../Include -I../Source -I../../AMD/Include -I../../SuiteSparse_config -I../../CHOLMOD/Include -DZLONG -c ../Source/umf_scale_column.c -o umf_zl_scale_column.o
### Update with 5.4 SuiteSparse
sudo yum install gcc-c++-4.8.5-28.el7.x86_64
module load cmake intel
export CC=icc; export FC=ifort; export F77=ifort; export CMAKE_CXX_COMPILER=icpc; export CMAKE_C_COMPILER=icc
make config
make
make install INSTALL=/usr/nic/libs/SuiteSparse/5.4.0_intel18 CC=icc FC=ifort
# using GCC
- Requires gcc > 4.9
- May use MKL library - can be downloaded as free
- CC=/share/apps/gcc/9.1/bin/gcc; FC=/share/apps/gcc/9.1/bin/gfortran; CXX=/share/apps/gcc/9.1/bin/g++; make config; make -j 20; make install INSTALL=/share/apps/SS/5.4_gcc91