Context Menu for Git Modified Files Unexpected Behavior

[seanmhanson]

I suspect that the context menu for the git modified files isn't pointing properly to the right files (I'm not actually sure how this works). A few examples:

Deletion

Which I right/cmd click a git modified file listed on in the extended tree and selecting delete, I get a message that I cannot delete the root of my project.

Renaming, Duplicating,

Which I right/cmd click a git modified file listed on in the extended tree and selecting rename, no rename interface is displayed. Behaviors like duplicate also are non-functional.