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thesis.tex
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\documentclass[a4paper, 12pt, twoside, leqno]{report} %openany, leqno
\usepackage{packagebundle}
% \usepackage{cite}
\input{preamble}
\begin{document}
\input{coverpage}
%\frontmatter
\pagenumbering{roman}
\input{front}
\tableofcontents
\addtocontents{toc}{\protect\thispagestyle{empty}}
\pagenumbering{gobble}
%\mainmatter
\pagenumbering{arabic}
\input{chapter-1}
\input{chapter-2}
\input{chapter-3}
\input{chapter-4}
\input{chapter-5}
\input{chapter-6}
%\input{chapter-7}
%\input{appendix}
\clearpage
\bibliography{references}
\nocite{*}
\bibliographystyle{alpha}
\end{document}
% defined everything we will use and only define things we need. under morphisms (which can be regarded as surface cobordisms),
% equation referencing ambiguity
% inconsistencies in writhes for links
% SA(D) state notation inconsistency
% unknot detector