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preamble.tex
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preamble.tex
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\usepackage{booktabs}
\usepackage{amsthm}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Code from cleanthesis
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% **************************************************
% Files' Character Encoding
% **************************************************
\PassOptionsToPackage{utf8}{inputenc}
\usepackage{inputenc}
% **************************************************
% Information and Commands for Reuse
% **************************************************
\newcommand{\thesisTitle}{Genome folding in evolution and disease}
\newcommand{\thesisName}{Jonas Ibn-Salem}
\newcommand{\thesisSubject}{Dissertation}
% \newcommand{\thesisDate}{January, 2018}
\newcommand{\thesisDate}{February, 2018}
\newcommand{\thesisVersion}{0.1.1}
\newcommand{\thesisFirstReviewer}{Prof. Dr. Miguel Andrade-Navarro}
\newcommand{\thesisFirstReviewerUniversity}{\protect{Johannes Gutenberg University Mainz}}
\newcommand{\thesisFirstReviewerDepartment}{Faculty of Biology}
\newcommand{\thesisSecondReviewer}{Jun.-Prof. Dr. Susanne Gerber}
\newcommand{\thesisSecondReviewerUniversity}{\protect{Johannes Gutenberg University Mainz}}
\newcommand{\thesisSecondReviewerDepartment}{Faculty of Biology and Center for Computational Sciences in Mainz}
\newcommand{\thesisFirstSupervisor}{Prof. Dr. Miguel Andrade-Navarro}
\newcommand{\thesisSecondSupervisor}{}
\newcommand{\thesisUniversity}{\protect{Johannes Gutenberg University Mainz}}
\newcommand{\thesisUniversityDepartment}{Faculty of Biology}
\newcommand{\thesisUniversityInstitute}{Institute of Organismic and Molecular Evolution}
\newcommand{\thesisUniversityGroup}{Computational Biology and Data Mining Group}
\newcommand{\thesisUniversityCity}{Mainz}
\newcommand{\thesisUniversityStreetAddress}{Ackermannweg 4}
\newcommand{\thesisUniversityPostalCode}{55128}
% **************************************************
% Debug LaTeX Information
% **************************************************
%\listfiles
% **************************************************
% Load and Configure Packages
% **************************************************
\usepackage[english]{babel} % babel system, adjust the language of the content
\PassOptionsToPackage{% setup clean thesis style
figuresep=colon,%
sansserif=false,%
hangfigurecaption=false,%
hangsection=true,%
hangsubsection=true,%
colorize=full,%
% colorize=bw,%
colortheme=jgured,%
% bibsys=bibtex,%
% bibfile=bib-refs,%
% bibstyle=numeric,%
wrapfooter=false,%
}{cleanthesis}
\usepackage{cleanthesis}
\hypersetup{% setup the hyperref-package options
pdftitle={\thesisTitle}, % - title (PDF meta)
pdfsubject={\thesisSubject},% - subject (PDF meta)
pdfauthor={\thesisName}, % - author (PDF meta)
plainpages=false, % -
colorlinks=false, % - colorize links?
linkcolor=ctcolormain, % - link color (e.g., TOC)
citecolor=ctcolormain, % - cite color
pdfborder={0 0 0}, % -
breaklinks=true, % - allow line break inside links
bookmarksnumbered=true, %
bookmarksopen=true %
}
\makeatletter
\def\thm@space@setup{%
\thm@preskip=8pt plus 2pt minus 4pt
\thm@postskip=\thm@preskip
}
\makeatother
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Code for custome style
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% \usepackage{cell} % use cell journal style
% \usepackage{genres} % use cell journal style
% \usepackage[backend=bibtex]{biblatex}