NAMESPACE

# Generated by roxygen2: do not edit by hand

export(BRCAness_immunotype)
export(OvRSeq)
export(OvRSeqReport)
export(OvaRSeqDataSet)
export(avg_expression_for_signature_se)
export(calculateIPS)
export(classify_brcaness)
export(classify_infiltration_status)
export(computeCytC1qaRatio)
export(computeVulnerabilityScore)
export(compute_angiogenesis_score)
export(deconvolute_immune)
export(get_consensus_ov_subtypes)
export(immune_signature_score)
export(load_TCGA_OV)
export(load_brcaness_classifier)
export(load_brcaness_signature)
export(load_classifier_infiltration_status)
export(load_immune_signatures)
export(load_small_immune_signatures)
export(load_tcgaStats)
export(load_tumor_immune_phenotype_signature)
export(plot_deconvolution_data)
export(plot_ggmarginal)
export(plot_ggmarginal_sample)
export(plot_immune_signature_one_sample)
export(plot_vulnerabilitymap)
export(train_rf)
export(train_rf_classifier_infiltration_status)
import(SummarizedExperiment)
import(dplyr)
import(ggplot2)
import(grid)
import(immunedeconv)
import(org.Hs.eg.db)
importFrom(AnnotationDbi,mapIds)
importFrom(GSVA,gsva)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(caret,train)
importFrom(consensusOV,get.consensus.subtypes)
importFrom(ggExtra,ggMarginal)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(knitr,kable)
importFrom(limma,voom)
importFrom(reshape2,melt)
importFrom(rlang,sym)
importFrom(stringr,str_remove)
importFrom(stringr,str_wrap)