-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathmodules.json
187 lines (187 loc) · 8.48 KB
/
modules.json
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
{
"name": "icgc-argo-workflows/dnaalnqc",
"homePage": "https://github.com/icgc-argo-workflows/dnaalnqc",
"repos": {
"https://github.com/icgc-argo-workflows/argo-modules.git": {
"modules": {
"icgc-argo-workflows": {
"checkinput": {
"branch": "impromptu_index",
"git_sha": "e1f2b946b457eac191c0fa97ae1d159a15874c6b",
"installed_by": ["modules", "stage_input"]
},
"cleanup": {
"branch": "main",
"git_sha": "8d014598ef81d65bece3684bd67aef7afae2cda9",
"installed_by": ["modules"]
},
"payload/qcmetrics": {
"branch": "main",
"git_sha": "681bcc1563700f8322be1ba65305a85e169f0909",
"installed_by": ["modules"]
},
"prep/metrics": {
"branch": "main",
"git_sha": "27b616a007c54d0e059d39345b575e7e3801ef72",
"installed_by": ["modules"]
},
"prep/sample": {
"branch": "impromptu_index",
"git_sha": "f253d1e6d4dc5f6ac0e6440041ee7e55b8203e35",
"installed_by": ["stage_input"]
},
"samtools/index": {
"branch": "impromptu_index",
"git_sha": "e1f2b946b457eac191c0fa97ae1d159a15874c6b",
"installed_by": ["stage_input"]
},
"score/download": {
"branch": "impromptu_index",
"git_sha": "19ee48fdf1672ef9723e3093531be7ddea3e27ec",
"installed_by": ["song_score_download"]
},
"score/upload": {
"branch": "main",
"git_sha": "19ee48fdf1672ef9723e3093531be7ddea3e27ec",
"installed_by": ["song_score_upload"]
},
"song/get": {
"branch": "impromptu_index",
"git_sha": "19ee48fdf1672ef9723e3093531be7ddea3e27ec",
"installed_by": ["song_score_download"]
},
"song/manifest": {
"branch": "main",
"git_sha": "19ee48fdf1672ef9723e3093531be7ddea3e27ec",
"installed_by": ["song_score_upload"]
},
"song/publish": {
"branch": "main",
"git_sha": "19ee48fdf1672ef9723e3093531be7ddea3e27ec",
"installed_by": ["song_score_upload"]
},
"song/submit": {
"branch": "main",
"git_sha": "19ee48fdf1672ef9723e3093531be7ddea3e27ec",
"installed_by": ["song_score_upload"]
},
"tabix/tabix": {
"branch": "impromptu_index",
"git_sha": "e1f2b946b457eac191c0fa97ae1d159a15874c6b",
"installed_by": ["stage_input"]
}
}
},
"subworkflows": {
"icgc-argo-workflows": {
"song_score_download": {
"branch": "impromptu_index",
"git_sha": "92aa620385099e94401c22b8633cc55ed34ca10e",
"installed_by": ["stage_input"]
},
"song_score_upload": {
"branch": "main",
"git_sha": "92aa620385099e94401c22b8633cc55ed34ca10e",
"installed_by": ["subworkflows"]
},
"stage_input": {
"branch": "impromptu_index",
"git_sha": "e1f2b946b457eac191c0fa97ae1d159a15874c6b",
"installed_by": ["subworkflows"]
}
}
}
},
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "de45447d060b8c8b98575bc637a4a575fd0638e1",
"installed_by": ["modules"]
},
"gatk4/calculatecontamination": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"gatk4/gatherpileupsummaries": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"gatk4/getpileupsummaries": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"gatk4/intervallisttobed": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"mosdepth": {
"branch": "master",
"git_sha": "69e3eb17fb31b772b18f134d6e8f8b93ee980e65",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "ccacf6f5de6df3bc6d73b665c1fd2933d8bbc290",
"installed_by": ["modules"]
},
"picard/bedtointervallist": {
"branch": "master",
"git_sha": "20b0918591d4ba20047d7e13e5094bcceba81447",
"installed_by": ["modules"]
},
"picard/collecthsmetrics": {
"branch": "master",
"git_sha": "20b0918591d4ba20047d7e13e5094bcceba81447",
"installed_by": ["bam_qc_picard", "modules"]
},
"picard/collectmultiplemetrics": {
"branch": "master",
"git_sha": "20b0918591d4ba20047d7e13e5094bcceba81447",
"installed_by": ["bam_qc_picard"]
},
"picard/collectwgsmetrics": {
"branch": "master",
"git_sha": "20b0918591d4ba20047d7e13e5094bcceba81447",
"installed_by": ["bam_qc_picard", "modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["modules"]
},
"tabix/bgziptabix": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"tabix/tabix": {
"branch": "master",
"git_sha": "9502adb23c0b97ed8e616bbbdfa73b4585aec9a1",
"installed_by": ["modules"]
},
"untarfiles": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"verifybamid/verifybamid2": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
}
}
}
}
}
}