Troubleshoot objects that fail during score download

[edsu7]

The follow sequencing experiments failed alignment during score download step b/c last chunk could not be downloaded.

Ticket to track debug.

First idea is to check object size and md5 on server matches song

sampleId	analysisId	runId	objectId	md5sum	fileSize
SA617566	fcff8414-c935-4ba2-bf84-14c9359ba213	wes-1a75b993a2c542109c402a88d12465c3	1fbb0eeb-3fa4-5797-b812-bd053bbdbab3	cb4c549507c5abf655e23289b224cb28	96691992163
SA617639	c109e1eb-fdd1-423e-89e1-ebfdd1d23e95	wes-0a78370095404338836a163b5b1e864e	c10954f9-42d9-513c-a5d8-122335668ec1	edd501489a1a31e82589fa6ead976d7e	59714771027
SA617641	7f941ecf-188e-40a8-941e-cf188e90a827	wes-dd21a22a8fb346d1a55ff8b5e12e4846	e5f20dd7-3b5d-500b-bb1f-2ffdfe65be60	8c1f5bf38d8aa4e3cdb975121e39cb67	37457945687
SA617730	31781b9f-c81d-4217-b81b-9fc81d22174f	wes-fddc5d93f0874769955e066074be1fde	9c69d3e9-bf5e-5ede-a959-dd6666fa9e9a	b2a8fa853df2a94e5ccc1f5c73eedef0	42798655156
SA617378	616ba069-fe8a-484e-aba0-69fe8a384e04	wes-8b08048a5e224e21a9c422ff6346add0	a5dad7c0-71ba-5d71-b427-0ba0964dc9f6	e6268f30aac02fb2f15a80888f09f8d0	80583516117
SA617471	bf30bfd4-e7ca-4b54-b0bf-d4e7ca1b548f	wes-b882220fcc0141529c6e1345c1e52a1f	192f5756-2a40-524e-8501-64262261d287	df4609ee2657e76c25ec21cb12059a62	85523635973
SA617856	29cf2471-c851-4819-8f24-71c8516819cc	wes-e98d1286e9b64d6e9c68bd4cb7ec618c	9106aaf1-dbca-5414-8ad2-928a946d2e51	46cd53b454c3fe75b2d42b59c442a32f	54677590562
SA617637	bc3cc58d-6ea9-4294-bcc5-8d6ea9529431	wes-7d59e19d2746485b938475afe51e7b7c	f00f41eb-86a7-5a74-bd56-dc593fb655ee	a8cfce6bee932c631593cbfd105750d0	80486166543
SA617556	1970b6ab-6c35-40ac-b0b6-ab6c35b0ac1a	wes-5b0377c1fede46c4acca633df3aee15a	aa46f480-0414-5f17-8da1-c6a889cb080d	fcab4edd493fe0d7f4feceb1ae449dce	77341172285
SA617728	f6778522-ba54-4f32-b785-22ba54ff320b	wes-ce43c6391dd04f8386e12c508f83676c	06e612ab-ace1-5708-a680-f1c79c41892c	1101afee42216da1dfa57b38f7b8d070	81815294563
SA617733	4355eee2-9e0a-454b-95ee-e29e0a954be3	wes-7e70db2c2987425ca9e0f2c4ff52d524	06393921-a391-5b21-84f3-4467718abaf1	75ec534328c0280de8662c6f6d8056da	95549121072

[edsu7]

Time stamps in SONG for each submission-score object

sampleId	analysisId	objectId	createdAt	UpdatedAt	firstPublishedAt
SA617566	fcff8414-c935-4ba2-bf84-14c9359ba213	1fbb0eeb-3fa4-5797-b812-bd053bbdbab3	2024-08-12T21:23:29.952423	2024-08-12T23:45:05.29505	2024-08-12T23:45:05.292642
SA617639	c109e1eb-fdd1-423e-89e1-ebfdd1d23e95	c10954f9-42d9-513c-a5d8-122335668ec1	2024-08-12T21:23:49.320162	2024-08-12T23:14:34.078239	2024-08-12T23:14:34.075887
SA617641	7f941ecf-188e-40a8-941e-cf188e90a827	e5f20dd7-3b5d-500b-bb1f-2ffdfe65be60	2024-08-12T17:38:03.368724	2024-08-12T18:53:20.174357	2024-08-12T18:53:20.172168
SA617730	31781b9f-c81d-4217-b81b-9fc81d22174f	9c69d3e9-bf5e-5ede-a959-dd6666fa9e9a	2024-08-12T13:15:16.218398	2024-08-12T14:30:01.811408	2024-08-12T14:30:01.808569
SA617378	616ba069-fe8a-484e-aba0-69fe8a384e04	a5dad7c0-71ba-5d71-b427-0ba0964dc9f6	2024-08-12T16:43:33.827888	2024-08-12T18:54:06.864834	2024-08-12T18:54:06.862885
SA617471	bf30bfd4-e7ca-4b54-b0bf-d4e7ca1b548f	192f5756-2a40-524e-8501-64262261d287	2024-08-12T20:30:50.126061	2024-08-12T22:46:54.99822	2024-08-12T22:46:54.995909
SA617856	29cf2471-c851-4819-8f24-71c8516819cc	9106aaf1-dbca-5414-8ad2-928a946d2e51	2024-08-12T20:45:59.318174	2024-08-12T22:25:33.631327	2024-08-12T22:25:33.628495
SA617637	bc3cc58d-6ea9-4294-bcc5-8d6ea9529431	f00f41eb-86a7-5a74-bd56-dc593fb655ee	2024-08-12T13:33:03.052334	2024-08-12T15:54:03.652189	2024-08-12T15:54:03.649538
SA617556	1970b6ab-6c35-40ac-b0b6-ab6c35b0ac1a	aa46f480-0414-5f17-8da1-c6a889cb080d	2024-08-12T17:47:24.923171	2024-08-12T19:51:20.792289	2024-08-12T19:51:20.790377
SA617728	f6778522-ba54-4f32-b785-22ba54ff320b	06e612ab-ace1-5708-a680-f1c79c41892c	2024-08-12T21:23:13.754569	2024-08-12T23:22:41.616758	2024-08-12T23:22:41.614484
SA617733	4355eee2-9e0a-454b-95ee-e29e0a954be3	06393921-a391-5b21-84f3-4467718abaf1	2024-08-12T17:58:36.317425	2024-08-12T20:21:25.150962	2024-08-12T20:21:25.148676

[edsu7]

Henro tried to check md5 using aws and rclone. EOF errors appeared.

Henro will contact IT

[edsu7]

analyses unpublished and Linda has contacted MUTO-INTL for reupload