(base) [nantkath@lemhi1 petsc]$ make check Running check examples to verify correct installation Using PETSC_DIR=/home/nantkath/projects/moose/petsc and PETSC_ARCH=arch-moose gmake[3]: [/home/nantkath/projects/moose/petsc/lib/petsc/conf/rules:298: ex19.PETSc] Error 2 (ignored) *******************Error detected during compile or link!******************* See http://www.mcs.anl.gov/petsc/documentation/faq.html /home/nantkath/projects/moose/petsc/src/snes/tutorials ex19 ********************************************************************************* mpicc -fopenmp -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-misleading-indentation -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g -O -fopenmp -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-misleading-indentation -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g -O -fopenmp -I/home/nantkath/projects/moose/petsc/include -I/home/nantkath/projects/moose/petsc/arch-moose/include -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/nantkath/miniconda3/lib -Wl,-rpath-link,/home/nantkath/miniconda3/lib -L/home/nantkath/miniconda3/lib ex19.c -Wl,-rpath,/home/nantkath/projects/moose/petsc/arch-moose/lib -L/home/nantkath/projects/moose/petsc/arch-moose/lib -Wl,-rpath,/home/nantkath/projects/moose/petsc/arch-moose/lib -L/home/nantkath/projects/moose/petsc/arch-moose/lib -Wl,-rpath,/apps/local/spack/opt/spack/gcc-11.2.0/hwloc-2.5.0-okhftxdqq2wzlac4czeawk7yp2dfzkat/lib -L/apps/local/spack/opt/spack/gcc-11.2.0/hwloc-2.5.0-okhftxdqq2wzlac4czeawk7yp2dfzkat/lib -Wl,-rpath,/apps/local/spack/opt/spack/gcc-11.2.0/libevent-2.1.12-ozcnpcdzmew5kleh6owqw34op4xxcblz/lib -L/apps/local/spack/opt/spack/gcc-11.2.0/libevent-2.1.12-ozcnpcdzmew5kleh6owqw34op4xxcblz/lib -Wl,-rpath,/apps/local/spack/opt/spack/gcc-11.2.0/zlib-1.2.11-h7dsbm3o5jkr55qaowwdflk42kwllyfk/lib -L/apps/local/spack/opt/spack/gcc-11.2.0/zlib-1.2.11-h7dsbm3o5jkr55qaowwdflk42kwllyfk/lib -Wl,-rpath,/apps/local/spack/opt/spack/gcc-11.2.0/zlib-1.2.11-h7 -L/apps/local/spack/opt/spack/gcc-11.2.0/zlib-1.2.11-h7 -Wl,-rpath,/opt/pbs/lib -L/opt/pbs/lib -Wl,-rpath,/apps/local/spack/opt/spack/gcc-11.2.0/openmpi-4.1.1-n2smki6zsd5yieqyhxf72hzohmf25ud7/lib -L/apps/local/spack/opt/spack/gcc-11.2.0/openmpi-4.1.1-n2smki6zsd5yieqyhxf72hzohmf25ud7/lib -Wl,-rpath,/apps/local/spack/opt/spack/gcc-9.4.0/gcc-11.2.0-mm7zu3s5gpimso4ke7erfzwkbrxwpv2u/lib:/apps/local/spack/opt/spack/gcc-9.4.0/gcc-11.2.0-mm7zu3s5gpimso4ke7erfzwkbrxwpv2u/lib64 -Wl,-rpath,/apps/local/spack/opt/spack/gcc-9.4.0/gcc-11.2.0-mm7zu3s5gpimso4ke7erfzwkbrxwpv2u/lib/gcc/x86_64-pc-linux-gnu/11.2.0 -L/apps/local/spack/opt/spack/gcc-9.4.0/gcc-11.2.0-mm7zu3s5gpimso4ke7erfzwkbrxwpv2u/lib/gcc/x86_64-pc-linux-gnu/11.2.0 -Wl,-rpath,/apps/local/spack/opt/spack/gcc-9.4.0/gcc-11.2.0-mm7zu3s5gpimso4ke7erfzwkbrxwpv2u/lib64 -L/apps/local/spack/opt/spack/gcc-9.4.0/gcc-11.2.0-mm7zu3s5gpimso4ke7erfzwkbrxwpv2u/lib64 -Wl,-rpath,/apps/local/spack/opt/spack/gcc-11.2.0/flex-2.6.4-wvjpi3og3n2onn5vvsjdezuyp7hztwk4/lib -L/apps/local/spack/opt/spack/gcc-11.2.0/flex-2.6.4-wvjpi3og3n2onn5vvsjdezuyp7hztwk4/lib -Wl,-rpath,/apps/local/spack/opt/spack/gcc-11.2.0/bison-3.7.6-ayslg6bcmqbnynq4prctrtzreibyxcz4/lib -L/apps/local/spack/opt/spack/gcc-11.2.0/bison-3.7.6-ayslg6bcmqbnynq4prctrtzreibyxcz4/lib -Wl,-rpath,/apps/local/spack/opt/spack/gcc-11.2.0/openblas-0.3.17-xvyehakvyrzgkb4ip66iskmyxumfuzzj/lib -L/apps/local/spack/opt/spack/gcc-11.2.0/openblas-0.3.17-xvyehakvyrzgkb4ip66iskmyxumfuzzj/lib -Wl,-rpath,/apps/local/spack/opt/spack/gcc-9.4.0/gcc-11.2.0-mm7zu3s5gpimso4ke7erfzwkbrxwpv2u/lib -L/apps/local/spack/opt/spack/gcc-9.4.0/gcc-11.2.0-mm7zu3s5gpimso4ke7erfzwkbrxwpv2u/lib -lpetsc -lHYPRE -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lstrumpack -lscalapack -lsuperlu_dist -lflapack -lfblas -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -lm -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lpthread -lrt -lquadmath -lstdc++ -ldl -o ex19 /usr/bin/ld: warning: libmpi.so.40, needed by /apps/local/spack/opt/spack/gcc-11.2.0/openmpi-4.1.1-n2smki6zsd5yieqyhxf72hzohmf25ud7/lib/libmpi_mpifh.so, may conflict with libmpi.so.12 /usr/bin/ld: /tmp/ccUDDkrw.o: undefined reference to symbol 'ompi_mpi_comm_self' //apps/local/spack/opt/spack/gcc-11.2.0/openmpi-4.1.1-n2smki6zsd5yieqyhxf72hzohmf25ud7/lib/libmpi.so.40: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status gmake[4]: *** [: ex19] Error 1 1,5c1,10 < lid velocity = 0.0016, prandtl # = 1., grashof # = 1. < 0 SNES Function norm 0.0406612 < 1 SNES Function norm 4.12227e-06 < 2 SNES Function norm 6.098e-11 < Number of SNES iterations = 2 --- > -------------------------------------------------------------------------- > mpiexec was unable to launch the specified application as it could not access > or execute an executable: > > Executable: ./ex19 > Node: lemhi1 > > while attempting to start process rank 0. > -------------------------------------------------------------------------- > 2 total processes failed to start /home/nantkath/projects/moose/petsc/src/snes/tutorials Possible problem with ex19 running with hypre, diffs above ========================================= 1,9c1,10 < lid velocity = 0.0625, prandtl # = 1., grashof # = 1. < 0 SNES Function norm 0.239155 < 0 KSP Residual norm 0.235858 < 1 KSP Residual norm < 1.e-11 < 1 SNES Function norm 6.81968e-05 < 0 KSP Residual norm 2.30906e-05 < 1 KSP Residual norm < 1.e-11 < 2 SNES Function norm < 1.e-11 < Number of SNES iterations = 2 --- > -------------------------------------------------------------------------- > mpiexec was unable to launch the specified application as it could not access > or execute an executable: > > Executable: ./ex19 > Node: lemhi1 > > while attempting to start process rank 0. > -------------------------------------------------------------------------- > 2 total processes failed to start /home/nantkath/projects/moose/petsc/src/snes/tutorials Possible problem with ex19 running with mumps, diffs above ========================================= 1,2c1,9 < lid velocity = 0.0025, prandtl # = 1., grashof # = 1. < Number of SNES iterations = 2 --- > -------------------------------------------------------------------------- > mpiexec was unable to launch the specified application as it could not access > or execute an executable: > > Executable: ./ex19 > Node: lemhi1 > > while attempting to start process rank 0. > -------------------------------------------------------------------------- /home/nantkath/projects/moose/petsc/src/snes/tutorials Possible problem with ex19 running with superlu_dist, diffs above ========================================= Completed test examples