DESCRIPTION

Package: harmony
Title: Fast, Sensitive, and Accurate Integration of Single Cell Data
Version: 1.2.0
Authors@R: c(
    person("Ilya", "Korsunsky", email = "ilya.korsunsky@gmail.com",
        role = c("cre", "aut"), comment = c(ORCID = "0000-0003-4848-3948")),
    person("Martin Hemberg", email = "mhemberg@bwh.harvard.edu",
        role = c("aut"), comment = c(ORCID = "0000-0001-8895-5239")),
    person("Nikolaos Patikas", email = "nik.patik@gmail.com",
        role = c("aut", "ctb"), comment = c(ORCID = "0000-0002-3978-0134")),
    person("Hongcheng Yao", email = "hongchengyaonk@gmail.com",
        role = c("aut", "ctb"), comment = c(ORCID = "0000-0002-0743-4835")),
    person("Nghia", "Millard", email = "nmillard@g.harvard.edu",
        role = "aut", comment = c(ORCID = "0000-0002-0518-7674")),
    person("Jean", "Fan", email = "jeanfan@fas.harvard.edu",
        role = c("aut", "ctb"), comment = c(ORCID = "0000-0002-0212-5451")),
    person("Kamil", "Slowikowski", email = "kslowikowski@gmail.com",
        role = c("aut", "ctb"), comment = c(ORCID = "0000-0002-2843-6370")),
    person("Miles", "Smith",
        role = c("ctb")),
    person("Soumya", "Raychaudhuri",
        role = c("aut"), comment = c(ORCID = "0000-0002-1901-8265"))
    )
Description: Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al <doi:10.1038/s41592-019-0619-0>. Package includes a standalone Harmony function and interfaces to external frameworks.
URL: software.broadinstitute.org/harmony
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.3
Depends: R(>= 3.5.0), Rcpp
LazyData: true
LazyDataCompression: gzip
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
Imports:
    dplyr,
    cowplot,
    ggplot2,
    Matrix,
    methods,
    tibble,
    rlang,
    RhpcBLASctl
Suggests:
    SingleCellExperiment,
    Seurat (>= 4.1.1),
    testthat,
    knitr,
    rmarkdown,
    ggthemes,
    ggrepel,
    patchwork,
    tidyverse,
    tidyr,
    data.table
VignetteBuilder: knitr