Releases: imgag/ClinCNV
Releases · imgag/ClinCNV
1.16.3
General:
- bug fixes from bug reports, mainly germline;
- 2 issues fixed (centromere coordinate, genes output)
- fixed the problem when <= 2 males were in the cohort
1.16.2
General:
- short-options removed (opt-parse package changed)
- updated docs
Germline:
- fixed mosaicism
Somatic:
- added flag 'complexTumor'
1.16.1
General:
- removed unnecessary parallelization
Germline:
- changed header
Somatic:
- bugfixes
- QC parameters (FDR)
- new baseline procedure
1.16.0
Major changes in somatic mode:
- changed procedure of baseline detection
- modified QC control
- additional QC metrics reported in header
Minor changes to germline mode:
- updated covariance calculation for overlapping input target regions
- re-formatted QC header
1.15.0
Major changes in somatic mode. Allele specific calling implemented. New QC.
1.14.1
Minor release: output was reformatted (QC lines were splitted, values rounded to human-readable length of decimals, etc)
1.14.0
Somatic:
-bugfixes
-new procedure for SNVs available for usage
Germline:
-super-recall mode
-offtarget reads in trio mode
1.13.0
Germline changes:
- polymorphic regions calling improved, working with provided polymorphic regions file
- one window CNVs detection possible
Somatic changes:
- Strict quality filters for low clonality variants
- Filtering of low-quality and polymorphic regions
1.12.0
- Polymorphic regions detection implemented
- Several bug fixes
1.11.0
Methods for segmentation, variance determination changed. Flags --purityStep and --degreesOfFreedomStudent added.