BamDownsample (2023_11-42-ga9d1687d)
Downsamples a BAM file to the given percentage of reads.
Mandatory parameters:
-in <file> Input BAM/CRAM file.
-percentage <float> Percentage of reads to keep.
-out <file> Output BAM/CRAM file.
Optional parameters:
-test Test mode: fix random number generator seed and write kept read names to STDOUT.
Default value: 'false'
-ref <file> Reference genome for CRAM support (mandatory if CRAM is used).
Default value: ''
Special parameters:
--help Shows this help and exits.
--version Prints version and exits.
--changelog Prints changeloge and exits.
--tdx Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
BamDownsample 2023_11-42-ga9d1687d
2020-11-27 Added CRAM support.