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BedAnnotateGC tool help

BedAnnotateGC (0.1-852-g5a7f2d2)

Annotates GC content fraction to regions in a BED file.

Optional parameters:
  -in <file>    Input BED file. If unset, reads from STDIN.
                Default value: ''
  -out <file>   Output BED file. If unset, writes to STDOUT.
                Default value: ''
  -ref <file>   Reference genome FASTA file. If unset, 'reference_genome' from the 'settings.ini' file is used.
                Default value: ''
  -extend <int> Bases to extend around the input region for calculating the GC content.
                Default value: '0'
  -clear        Clear all annotations present in the input file.
                Default value: 'false'

Special parameters:
  --help        Shows this help and exits.
  --version     Prints version and exits.
  --changelog   Prints changeloge and exits.
  --tdx         Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.

BedAnnotateGC changelog

BedAnnotateGC 0.1-852-g5a7f2d2

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