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BedGeneOverlap tool help

BedGeneOverlap (0.1-782-ge325449)

Calculates how much of each overlapping gene is covered.

Mandatory parameters:
  -source <enum> Transcript source database.
                 Valid: 'ccds,ensembl'

Optional parameters:
  -in <file>     Input BED file. If unset, reads from STDIN.
                 Default value: ''
  -out <file>    Output TSV file. If unset, writes to STDOUT.
                 Default value: ''
  -test          Uses the test database instead of on the production database.
                 Default value: 'false'

Special parameters:
  --help         Shows this help and exits.
  --version      Prints version and exits.
  --changelog    Prints changeloge and exits.
  --tdx          Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.

BedGeneOverlap changelog

BedGeneOverlap 0.1-782-ge325449

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