FastqDownsample (2020_03-159-g5c8b2e82)
Downsamples paired-end FASTQ files.
Mandatory parameters:
-in1 <file> Forward input gzipped FASTQ file(s).
-in2 <file> Reverse input gzipped FASTQ file(s).
-percentage <float> Percentage of reads to keep.
-out1 <file> Forward output gzipped FASTQ file.
-out2 <file> Reverse output gzipped FASTQ file.
Optional parameters:
-test Test mode: fix random number generator seed and write kept read names to STDOUT.
Default value: 'false'
-compression_level <int> Output FASTQ compression level from 1 (fastest) to 9 (best compression).
Default value: '1'
Special parameters:
--help Shows this help and exits.
--version Prints version and exits.
--changelog Prints changeloge and exits.
--tdx Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
FastqDownsample 2020_03-159-g5c8b2e82
2020-07-15 Initial version of this tool.