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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>3DMol Protein</title>
<link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.4.1/css/bootstrap.min.css" integrity="sha384-Vkoo8x4CGsO3+Hhxv8T/Q5PaXtkKtu6ug5TOeNV6gBiFeWPGFN9MuhOf23Q9Ifjh" crossorigin="anonymous">
<link href="https://cdn.jsdelivr.net/npm/bootstrap@5.0.2/dist/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-EVSTQN3/azprG1Anm3QDgpJLIm9Nao0Yz1ztcQTwFspd3yD65VohhpuuCOmLASjC" crossorigin="anonymous">
<link rel="stylesheet" href="CSS/style.css">
<style>
.mol-container {
width: 60%;
height: 400px;
position: relative;
}
</style>
</head>
<body>
<div id="sidebar">
<button id="sidebar-btn" type="button" class="btn btn-outline-light">Close</button>
<div id="library">
<p class="info">Select a protein to view in the 3D Model Display</p>
<div id="table-title" class="title">Top 50 Scored PDBs</div>
<div id="pdb-ids">
<table>
<tr><td class="pdb" value="4OR0">4OR0</td></tr>
<tr><td class="pdb" value="2VDB">2VDB</td></tr>
<tr><td class="pdb" value="4OT2">4OT2</td></tr>
<tr><td class="pdb" value="5DBY">5DBY</td></tr>
<tr><td class="pdb" value="4ZBR">4ZBR</td></tr>
<tr><td class="pdb" value="4JQ1">4JQ1</td></tr>
<tr><td class="pdb" value="4L0A">4L0A</td></tr>
<tr><td class="pdb" value="2P06">2P06</td></tr>
<tr><td class="pdb" value="2ZJR">2ZJR</td></tr>
<!-- <tr><td class="pdb" value="4YUU">4YUU</td></tr> -->
<tr><td class="pdb" value="2EJF">2EJF</td></tr>
<tr><td class="pdb" value="1UG9">1UG9</td></tr>
<tr><td class="pdb" value="4FJP">4FJP</td></tr>
<tr><td class="pdb" value="6SVS">6SVS</td></tr>
<!-- <tr><td class="pdb" value="3GLP">3GLP</td></tr> -->
<tr><td class="pdb" value="2F2H">2F2H</td></tr>
<tr><td class="pdb" value="1ZRU">1ZRU</td></tr>
<tr><td class="pdb" value="3Q9H">3Q9H</td></tr>
<tr><td class="pdb" value="3EDK">3EDK</td></tr>
<tr><td class="pdb" value="3EDJ">3EDJ</td></tr>
<tr><td class="pdb" value="3EDE">3EDE</td></tr>
<tr><td class="pdb" value="4PEV">4PEV</td></tr>
<tr><td class="pdb" value="3OI8">3OI8</td></tr>
<tr><td class="pdb" value="5D99">5D99</td></tr>
<tr><td class="pdb" value="4NXH">4NXH</td></tr>
<tr><td class="pdb" value="3DVZ">3DVZ</td></tr>
<tr><td class="pdb" value="2GQ7">2GQ7</td></tr>
<tr><td class="pdb" value="2GQ6">2GQ6</td></tr>
<tr><td class="pdb" value="2GQ5">2GQ5</td></tr>
<tr><td class="pdb" value="2GQ4">2GQ4</td></tr>
<tr><td class="pdb" value="2G32">2G32</td></tr>
<tr><td class="pdb" value="7DNS">7DNS</td></tr>
<tr><td class="pdb" value="2AXT">2AXT</td></tr>
<tr><td class="pdb" value="1R0U">1R0U</td></tr>
<tr><td class="pdb" value="1O82">1O82</td></tr>
<tr><td class="pdb" value="1JMX">1JMX</td></tr>
<tr><td class="pdb" value="1W6S">1W6S</td></tr>
<tr><td class="pdb" value="1RWH">1RWH</td></tr>
<tr><td class="pdb" value="1CB8">1CB8</td></tr>
<tr><td class="pdb" value="3ZTV">3ZTV</td></tr>
<tr><td class="pdb" value="3UAY">3UAY</td></tr>
<tr><td class="pdb" value="3UAW">3UAW</td></tr>
<tr><td class="pdb" value="3QWU">3QWU</td></tr>
<tr><td class="pdb" value="3H9U">3H9U</td></tr>
<tr><td class="pdb" value="7LHN">7LHN</td></tr>
<tr><td class="pdb" value="7LHM">7LHM</td></tr>
<tr><td class="pdb" value="7EIR">7EIR</td></tr>
<tr><td class="pdb" value="6XLT">6XLT</td></tr>
<tr><td class="pdb" value="4YW4">4YW4</td></tr>
<tr><td class="pdb" value="3M46">3M46</td></tr>
</table>
</div>
<div class="title" style="margin-top: 15px; margin-bottom: -15px;">
<p class="info">Search for any protein using PDB id. For exampel "3EML".</p>
</div>
<div class="input-group mb-3">
<input type="text" class="form-control pdbid" placeholder="PDB id" aria-label="Recipient's username" aria-describedby="basic-addon2">
<span class="input-group-text search " 3dview="protein-01" err="pdb-error01">search</span>
</div>
<p id="pdb-error01" class="pdb-error" hidden>A PDB with that id was not found.</p>
<div class="title" style="margin-top: 15px; text-align: center;">
<p class="info">Select a number of 3D Model Displays to view side by side.</p>
<select class="form-select" style="width: 80px; display: inline-block;">
<option onclick="displays(1)" selected>1</option>
<option onclick="displays(2)">2</option>
<option onclick="displays(3)">3</option>
<option onclick="displays(4)">4</option>
</select>
</div>
</div>
</div>
<div id="dashboard">
<div class="section">
<!-- Main Container, only sidebar table and search work here. -->
<div class="container">
<div class="title top"><h5>3D Model Display</h5></div>
<div id="protein-01" class="style-protein"></div>
<!-- Controls start here -->
<div class="title controls">
<!-- HETATM Buttons -->
<div id="hetatm-protein-01" class="control-row">
<div id="hetatm" class="hetatm-box">
<input class="form-check-input" type="checkbox" checked hidden>
<label class="form-check-label" for="flexRadioDefault2"></label>
</div>
</div>
<!-- Chain Style Buttons -->
<div class="control-row">
<input id="display-protein-01" class="form-check-input" onclick="chainDisplay('protein-01')" type="checkbox" checked>
<select id="chains-protein-01" class="form-select form-select-sm" aria-label=".form-select-sm example">
<option id="chain" onclick="chain('protein-01', 'ALL')" selected>ALL</option>
</select>
<label>Chain</label>
<div class="btn-group" role="group" aria-label="Basic example" 3dview="protein-01">
<button type="button" class="btn btn-light btn-sm style-btn" value=0>Line</button>
<button type="button" class="btn btn-light btn-sm style-btn" value=1>Cross</button>
<button type="button" class="btn btn-light btn-sm style-btn" value=2>Stick</button>
<div class="btn-group" role="group" 3dview="protein-01">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Cartoon
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=3>default</a></li>
<li><a class="dropdown-item style-btn" value=4>trace</a></li>
</div>
<div class="btn-group" role="group" 3dview="protein-01">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Sphere
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=5>radius: 0.5</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 1.0</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 1.5</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 2.0</a></li>
</div>
<div class="btn-group" role="group" 3dview="protein-01" typeStyle="{}">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Color
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=6>spectrum</a></li>
<li><a class="dropdown-item style-btn" value=6>salmon</a></li>
<li><a class="dropdown-item style-btn" value=6>red</a></li>
<li><a class="dropdown-item style-btn" value=6>lightblue</a></li>
<li><a class="dropdown-item style-btn" value=6>blue</a></li>
<li><a class="dropdown-item style-btn" value=6>lightgreen</a></li>
<li><a class="dropdown-item style-btn" value=6>seagreen</a></li>
<li><a class="dropdown-item style-btn" value=6>green</a></li>
<li><a class="dropdown-item style-btn" value=6>lightyellow</a></li>
<li><a class="dropdown-item style-btn" value=6>yellow</a></li>
<li><a class="dropdown-item style-btn" value=6>mediumpurple</a></li>
<li><a class="dropdown-item style-btn" value=6>purple</a></li>
<li><a class="dropdown-item style-btn" value=6>violet</a></li>
<li><a class="dropdown-item style-btn" value=6>pink</a></li>
<li><a class="dropdown-item style-btn" value=6>grey</a></li>
<li><a class="dropdown-item style-btn" value=6>black</a></li>
</div>
<button id ="label-protein-01" type="button" class="btn btn-light btn-sm style-btn" cntrl=0 value=7>Labels</button>
</div>
</div>
<!-- Spin Control Buttons -->
<div class="control-row" 3dview="protein-01">
<input class="form-check-input spin" type="checkbox">
<label class="form-check-label" for="flexCheckDefault">Spin</label>
<select class="form-select form-select-sm">
<option onclick="speed('protein-01', 0.5)" selected>0.5</option>
<option onclick="speed('protein-01', 1.0)">1.0</option>
<option onclick="speed('protein-01', 1.5)">1.5</option>
<option onclick="speed('protein-01', 2.0)">2.0</option>
<option onclick="speed('protein-01', 2.5)">2.5</option>
<option onclick="speed('protein-01', 3.0)">3.0</option>
<option onclick="speed('protein-01', 3.5)">3.5</option>
<option onclick="speed('protein-01', 4.0)">4.0</option>
</select>
<label>Speed</label>
</div>
</div>
</div>
<!-- PDB data displayed here. -->
<div class="pdb-details">
<h2><strong id="pdbid-protein-01"></strong></h2>
<h5><strong id="header-protein-01"></strong></h5>
<p id="title-protein-01" style="font-size: 18px;"></p>
<button id="download-pdb" type="button" class="btn btn-success btn-sm opt">Download PDB</button>
</div>
</div>
<div class="section">
<div class="title">
<h2><strong>Molecular Visualization with WebGL</strong></h2>
</div>
<img src="CSS/3dmol-example.png" style="width: 25%; max-width: 450px; min-width: 250px; display: inline-block; vertical-align: top;">
<div style="display: inline-block; width: 74%; max-width: 800px; vertical-align: top; text-align: start; padding-left: 15px;">
<p style="font-size: 20px;">Molecular visualization is an essential tool for computational chemists
and biologists. Due to the demanding nature of three-dimensional
(3D) graphics, most molecular viewers are desktop applications. The
need to install specialized applications and, in some cases, the restrictive
nature of the software licenses, introduces hurdles to the sharing
of molecular data. Unlike a desktop application, a standards-based client-side
web application comes pre-installed with every computer and
mobile device with a modern web browser and can be seamlessly integrated
into online environments for accessing and analyzing molecular data.</p>
</div>
</div>
<div class="section">
<div class="title">
<h2><strong>Side-by-Side 3D Displays</strong></h2>
</div>
<!-- Container 1 -->
<div id="container-01" class="container">
<div class="title top" style="text-align: end;">
<p id="pdb-error02" class="pdb-error" hidden="hidden">PDB id not found.</p>
<div class="indv-search">
<div class="input-group mb-3">
<input type="text" class="form-control pdbid form-control-sm" placeholder="PDB id" aria-label="Recipient's username" aria-describedby="basic-addon2">
<span class="input-group-text search" style="height: 31px;" 3dview="protein-02" err="pdb-error02">search</span>
</div>
</div>
<input type="file" id="file-protein-02" class="pdb-upload" hidden="hidden">
<button type="button" class="btn btn-success btn-sm opt" 3dview="protein-02">Upload PDB</button>
<p class="pdb-file-nm" hidden="hidden"></p>
</div>
<div id="protein-02" class="style-protein"></div>
<!-- Controls start here -->
<div class="title controls">
<div class="control-row container-info">
<p><strong id="pdbid-protein-02"></strong></p>
<p id="title-protein-02"></p>
</div>
<!-- HETATM Buttons -->
<div class="control-row" 3dview="protein-02">
<div id="hetatm-protein-02" class="hetatm">
<input class="form-check-input check" type="checkbox" id="check-protein-02" hetatm="" checked hidden>
<label class="form-check-label" for="flexRadioDefault2"></label>
</div>
</div>
<!-- Chain Style Buttons -->
<div class="control-row">
<input id="display-protein-02" class="form-check-input" onclick="chainDisplay('protein-02')" type="checkbox" checked>
<select id="chains-protein-02" class="form-select form-select-sm" aria-label=".form-select-sm example">
<option id="chain" onclick="chain('protein-02', 'ALL')" selected>ALL</option>
</select>
<label>Chain</label>
<div class="btn-group" role="group" aria-label="Basic example" 3dview="protein-02">
<button type="button" class="btn btn-light btn-sm style-btn" value=0>Line</button>
<button type="button" class="btn btn-light btn-sm style-btn" value=1>Cross</button>
<button type="button" class="btn btn-light btn-sm style-btn" value=2>Stick</button>
<div class="btn-group" role="group" 3dview="protein-02">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Cartoon
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=3>default</a></li>
<li><a class="dropdown-item style-btn" value=4>trace</a></li>
</div>
<div class="btn-group" role="group" 3dview="protein-02">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Sphere
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=5>radius: 0.5</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 1.0</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 1.5</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 2.0</a></li>
</div>
<div class="btn-group" role="group" 3dview="protein-02" typeStyle="{}">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Color
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=6>spectrum</a></li>
<li><a class="dropdown-item style-btn" value=6>salmon</a></li>
<li><a class="dropdown-item style-btn" value=6>red</a></li>
<li><a class="dropdown-item style-btn" value=6>lightblue</a></li>
<li><a class="dropdown-item style-btn" value=6>blue</a></li>
<li><a class="dropdown-item style-btn" value=6>lightgreen</a></li>
<li><a class="dropdown-item style-btn" value=6>seagreen</a></li>
<li><a class="dropdown-item style-btn" value=6>green</a></li>
<li><a class="dropdown-item style-btn" value=6>lightyellow</a></li>
<li><a class="dropdown-item style-btn" value=6>yellow</a></li>
<li><a class="dropdown-item style-btn" value=6>mediumpurple</a></li>
<li><a class="dropdown-item style-btn" value=6>purple</a></li>
<li><a class="dropdown-item style-btn" value=6>violet</a></li>
<li><a class="dropdown-item style-btn" value=6>pink</a></li>
<li><a class="dropdown-item style-btn" value=6>grey</a></li>
<li><a class="dropdown-item style-btn" value=6>black</a></li>
</div>
<button id ="label-protein-02" type="button" class="btn btn-light btn-sm style-btn" cntrl=0 value=7>Labels</button>
</div>
</div>
<!-- Spin Control Buttons -->
<div class="control-row" 3dview="protein-02">
<input class="form-check-input spin" type="checkbox">
<label class="form-check-label" for="flexCheckDefault">Spin</label>
<select class="form-select form-select-sm">
<option onclick="speed('protein-02', 0.5)" selected>0.5</option>
<option onclick="speed('protein-02', 1.0)">1.0</option>
<option onclick="speed('protein-02', 1.5)">1.5</option>
<option onclick="speed('protein-02', 2.0)">2.0</option>
<option onclick="speed('protein-02', 2.5)">2.5</option>
<option onclick="speed('protein-02', 3.0)">3.0</option>
<option onclick="speed('protein-02', 3.5)">3.5</option>
<option onclick="speed('protein-02', 4.0)">4.0</option>
</select>
<label>Speed</label>
</div>
</div>
</div>
<!-- Container 2 -->
<div id="container-02" class="container">
<div class="title top" style="text-align: end;">
<p id="pdb-error03" class="pdb-error" hidden="hidden">PDB id not found.</p>
<div class="indv-search">
<div class="input-group mb-3">
<input type="text" class="form-control pdbid form-control-sm" placeholder="PDB id" aria-label="Recipient's username" aria-describedby="basic-addon2">
<span class="input-group-text search" style="height: 31px;" 3dview="protein-03" err="pdb-error03">search</span>
</div>
</div>
<input type="file" id="file-protein-03" class="pdb-upload" hidden="hidden">
<button type="button" class="btn btn-success btn-sm opt" 3dview="protein-03">Upload PDB</button>
<p class="pdb-file-nm" hidden="hidden"></p>
</div>
<div id="protein-03" class="style-protein"></div>
<!-- Controls start here -->
<div class="title controls">
<div class="control-row container-info">
<p><strong id="pdbid-protein-03"></strong></p>
<p id="title-protein-03"></p>
</div>
<!-- HETATM Buttons -->
<div class="control-row" 3dview="protein-03">
<div id="hetatm-protein-03" class="hetatm">
<input class="form-check-input check" type="checkbox" id="check-protein-03" hetatm="" checked hidden>
<label class="form-check-label" for="flexRadioDefault2"></label>
</div>
</div>
<!-- Chain Style Buttons -->
<div class="control-row">
<input id="display-protein-03" class="form-check-input" onclick="chainDisplay('protein-03')" type="checkbox" checked>
<select id="chains-protein-03" class="form-select form-select-sm" aria-label=".form-select-sm example">
<option id="chain" onclick="chain('protein-03', 'ALL')" selected>ALL</option>
</select>
<label>Chain</label>
<div class="btn-group" role="group" aria-label="Basic example" 3dview="protein-03">
<button type="button" class="btn btn-light btn-sm style-btn" value=0>Line</button>
<button type="button" class="btn btn-light btn-sm style-btn" value=1>Cross</button>
<button type="button" class="btn btn-light btn-sm style-btn" value=2>Stick</button>
<div class="btn-group" role="group" 3dview="protein-03">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Cartoon
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=3>default</a></li>
<li><a class="dropdown-item style-btn" value=4>trace</a></li>
</div>
<div class="btn-group" role="group" 3dview="protein-03">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Sphere
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=5>radius: 0.5</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 1.0</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 1.5</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 2.0</a></li>
</div>
<div class="btn-group" role="group" 3dview="protein-03" typeStyle="{}">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Color
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=6>spectrum</a></li>
<li><a class="dropdown-item style-btn" value=6>salmon</a></li>
<li><a class="dropdown-item style-btn" value=6>red</a></li>
<li><a class="dropdown-item style-btn" value=6>lightblue</a></li>
<li><a class="dropdown-item style-btn" value=6>blue</a></li>
<li><a class="dropdown-item style-btn" value=6>lightgreen</a></li>
<li><a class="dropdown-item style-btn" value=6>seagreen</a></li>
<li><a class="dropdown-item style-btn" value=6>green</a></li>
<li><a class="dropdown-item style-btn" value=6>lightyellow</a></li>
<li><a class="dropdown-item style-btn" value=6>yellow</a></li>
<li><a class="dropdown-item style-btn" value=6>mediumpurple</a></li>
<li><a class="dropdown-item style-btn" value=6>purple</a></li>
<li><a class="dropdown-item style-btn" value=6>violet</a></li>
<li><a class="dropdown-item style-btn" value=6>pink</a></li>
<li><a class="dropdown-item style-btn" value=6>grey</a></li>
<li><a class="dropdown-item style-btn" value=6>black</a></li>
</div>
<button id ="label-protein-03" type="button" class="btn btn-light btn-sm style-btn" cntrl=0 value=7>Labels</button>
</div>
</div>
<!-- Spin Control Buttons -->
<div class="control-row" 3dview="protein-03">
<input class="form-check-input spin" type="checkbox">
<label class="form-check-label" for="flexCheckDefault">Spin</label>
<select class="form-select form-select-sm">
<option onclick="speed('protein-03', 0.5)" selected>0.5</option>
<option onclick="speed('protein-03', 1.0)">1.0</option>
<option onclick="speed('protein-03', 1.5)">1.5</option>
<option onclick="speed('protein-03', 2.0)">2.0</option>
<option onclick="speed('protein-03', 2.5)">2.5</option>
<option onclick="speed('protein-03', 3.0)">3.0</option>
<option onclick="speed('protein-03', 3.5)">3.5</option>
<option onclick="speed('protein-03', 4.0)">4.0</option>
</select>
<label>Speed</label>
</div>
</div>
</div>
<!-- Container 3 -->
<div id="container-03" class="container">
<div class="title top" style="text-align: end;">
<p id="pdb-error04" class="pdb-error" hidden="hidden">PDB id not found.</p>
<div class="indv-search">
<div class="input-group mb-3">
<input type="text" class="form-control pdbid form-control-sm" placeholder="PDB id" aria-label="Recipient's username" aria-describedby="basic-addon2">
<span class="input-group-text search" style="height: 31px;" 3dview="protein-04" err="pdb-error04">search</span>
</div>
</div>
<input type="file" id="file-protein-04" class="pdb-upload" hidden="hidden">
<button type="button" class="btn btn-success btn-sm opt" 3dview="protein-04">Upload PDB</button>
<p class="pdb-file-nm" hidden="hidden"></p>
</div>
<div id="protein-04" class="style-protein"></div>
<!-- Controls start here -->
<div class="title controls">
<div class="control-row container-info">
<p><strong id="pdbid-protein-04"></strong></p>
<p id="title-protein-04"></p>
</div>
<!-- HETATM Buttons -->
<div class="control-row" 3dview="protein-04">
<div id="hetatm-protein-04" class="hetatm">
<input class="form-check-input check" type="checkbox" id="check-protein-04" hetatm="" checked hidden>
<label class="form-check-label" for="flexRadioDefault2"></label>
</div>
</div>
<!-- Chain Style Buttons -->
<div class="control-row">
<input id="display-protein-04" class="form-check-input" onclick="chainDisplay('protein-04')" type="checkbox" checked>
<select id="chains-protein-04" class="form-select form-select-sm" aria-label=".form-select-sm example">
<option id="chain" onclick="chain('protein-04', 'ALL')" selected>ALL</option>
</select>
<label>Chain</label>
<div class="btn-group" role="group" aria-label="Basic example" 3dview="protein-04">
<button type="button" class="btn btn-light btn-sm style-btn" value=0>Line</button>
<button type="button" class="btn btn-light btn-sm style-btn" value=1>Cross</button>
<button type="button" class="btn btn-light btn-sm style-btn" value=2>Stick</button>
<div class="btn-group" role="group" 3dview="protein-04">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Cartoon
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=3>default</a></li>
<li><a class="dropdown-item style-btn" value=4>trace</a></li>
</div>
<div class="btn-group" role="group" 3dview="protein-04">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Sphere
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=5>radius: 0.5</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 1.0</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 1.5</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 2.0</a></li>
</div>
<div class="btn-group" role="group" 3dview="protein-04" typeStyle="{}">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Color
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=6>spectrum</a></li>
<li><a class="dropdown-item style-btn" value=6>salmon</a></li>
<li><a class="dropdown-item style-btn" value=6>red</a></li>
<li><a class="dropdown-item style-btn" value=6>lightblue</a></li>
<li><a class="dropdown-item style-btn" value=6>blue</a></li>
<li><a class="dropdown-item style-btn" value=6>lightgreen</a></li>
<li><a class="dropdown-item style-btn" value=6>seagreen</a></li>
<li><a class="dropdown-item style-btn" value=6>green</a></li>
<li><a class="dropdown-item style-btn" value=6>lightyellow</a></li>
<li><a class="dropdown-item style-btn" value=6>yellow</a></li>
<li><a class="dropdown-item style-btn" value=6>mediumpurple</a></li>
<li><a class="dropdown-item style-btn" value=6>purple</a></li>
<li><a class="dropdown-item style-btn" value=6>violet</a></li>
<li><a class="dropdown-item style-btn" value=6>pink</a></li>
<li><a class="dropdown-item style-btn" value=6>grey</a></li>
<li><a class="dropdown-item style-btn" value=6>black</a></li>
</div>
<button id ="label-protein-04" type="button" class="btn btn-light btn-sm style-btn" cntrl=0 value=7>Labels</button>
</div>
</div>
<!-- Spin Control Buttons -->
<div class="control-row" 3dview="protein-04">
<input class="form-check-input spin" type="checkbox">
<label class="form-check-label" for="flexCheckDefault">Spin</label>
<select class="form-select form-select-sm">
<option onclick="speed('protein-04', 0.5)" selected>0.5</option>
<option onclick="speed('protein-04', 1.0)">1.0</option>
<option onclick="speed('protein-04', 1.5)">1.5</option>
<option onclick="speed('protein-04', 2.0)">2.0</option>
<option onclick="speed('protein-04', 2.5)">2.5</option>
<option onclick="speed('protein-04', 3.0)">3.0</option>
<option onclick="speed('protein-04', 3.5)">3.5</option>
<option onclick="speed('protein-04', 4.0)">4.0</option>
</select>
<label>Speed</label>
</div>
</div>
</div>
<!-- Container 4 -->
<div id="container-04" class="container">
<div class="title top" style="text-align: end;">
<p id="pdb-error05" class="pdb-error" hidden="hidden">PDB id not found.</p>
<div class="indv-search">
<div class="input-group mb-3">
<input type="text" class="form-control pdbid form-control-sm" placeholder="PDB id" aria-label="Recipient's username" aria-describedby="basic-addon2">
<span class="input-group-text search" style="height: 31px;" 3dview="protein-05" err="pdb-error05">search</span>
</div>
</div>
<input type="file" id="file-protein-05" class="pdb-upload" hidden="hidden">
<button type="button" class="btn btn-success btn-sm opt" 3dview="protein-05">Upload PDB</button>
<p class="pdb-file-nm" hidden="hidden"></p>
</div>
<div id="protein-05" class="style-protein"></div>
<!-- Controls start here -->
<div class="title controls">
<div class="control-row container-info">
<p><strong id="pdbid-protein-05"></strong></p>
<p id="title-protein-05"></p>
</div>
<!-- HETATM Buttons -->
<div class="control-row" 3dview="protein-05">
<div id="hetatm-protein-05" class="hetatm">
<input class="form-check-input check" type="checkbox" id="check-protein-05" hetatm="" checked hidden>
<label class="form-check-label" for="flexRadioDefault2"></label>
</div>
</div>
<!-- Chain Style Buttons -->
<div class="control-row">
<input id="display-protein-05" class="form-check-input" onclick="chainDisplay('protein-05')" type="checkbox" checked>
<select id="chains-protein-05" class="form-select form-select-sm" aria-label=".form-select-sm example">
<option id="chain" onclick="chain('protein-05', 'ALL')" selected>ALL</option>
</select>
<label>Chain</label>
<div class="btn-group" role="group" aria-label="Basic example" 3dview="protein-05">
<button type="button" class="btn btn-light btn-sm style-btn" value=0>Line</button>
<button type="button" class="btn btn-light btn-sm style-btn" value=1>Cross</button>
<button type="button" class="btn btn-light btn-sm style-btn" value=2>Stick</button>
<div class="btn-group" role="group" 3dview="protein-05">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Cartoon
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=3>default</a></li>
<li><a class="dropdown-item style-btn" value=4>trace</a></li>
</div>
<div class="btn-group" role="group" 3dview="protein-05">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Sphere
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=5>radius: 0.5</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 1.0</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 1.5</a></li>
<li><a class="dropdown-item style-btn" value=5>radius: 2.0</a></li>
</div>
<div class="btn-group" role="group" 3dview="protein-05" typeStyle="{}">
<button type="button" class="btn btn-light btn-sm dropdown-toggle" data-bs-toggle="dropdown" aria-expanded="false">
Color
</button>
<ul class="dropdown-menu" aria-labelledby="btnGroupDrop1">
<li><a class="dropdown-item style-btn" value=6>spectrum</a></li>
<li><a class="dropdown-item style-btn" value=6>salmon</a></li>
<li><a class="dropdown-item style-btn" value=6>red</a></li>
<li><a class="dropdown-item style-btn" value=6>lightblue</a></li>
<li><a class="dropdown-item style-btn" value=6>blue</a></li>
<li><a class="dropdown-item style-btn" value=6>lightgreen</a></li>
<li><a class="dropdown-item style-btn" value=6>seagreen</a></li>
<li><a class="dropdown-item style-btn" value=6>green</a></li>
<li><a class="dropdown-item style-btn" value=6>lightyellow</a></li>
<li><a class="dropdown-item style-btn" value=6>yellow</a></li>
<li><a class="dropdown-item style-btn" value=6>mediumpurple</a></li>
<li><a class="dropdown-item style-btn" value=6>purple</a></li>
<li><a class="dropdown-item style-btn" value=6>violet</a></li>
<li><a class="dropdown-item style-btn" value=6>pink</a></li>
<li><a class="dropdown-item style-btn" value=6>grey</a></li>
<li><a class="dropdown-item style-btn" value=6>black</a></li>
</div>
<button id ="label-protein-05" type="button" class="btn btn-light btn-sm style-btn" cntrl=0 value=7>Labels</button>
</div>
</div>
<!-- Spin Control Buttons -->
<div class="control-row" 3dview="protein-05">
<input class="form-check-input spin" type="checkbox">
<label class="form-check-label" for="flexCheckDefault">Spin</label>
<select class="form-select form-select-sm">
<option onclick="speed('protein-05', 0.5)" selected>0.5</option>
<option onclick="speed('protein-05', 1.0)">1.0</option>
<option onclick="speed('protein-05', 1.5)">1.5</option>
<option onclick="speed('protein-05', 2.0)">2.0</option>
<option onclick="speed('protein-05', 2.5)">2.5</option>
<option onclick="speed('protein-05', 3.0)">3.0</option>
<option onclick="speed('protein-05', 3.5)">3.5</option>
<option onclick="speed('protein-05', 4.0)">4.0</option>
</select>
<label>Speed</label>
</div>
</div>
</div>
</div>
<div class="section">
<h5><strong>Resources</strong></h5>
<p>RCSB PDB(Protein Data Bank): <a style="font-style: italic;">Biological macromolecular structures enabling breakthroughs in research and education.</a> <a href="https://www.rcsb.org/">Visit</a></p>
<p>3Dmol: <a style="font-style: italic;">A modern, object-oriented JavaScript library for visualizing molecular data.</a> <a href="http://3dmol.csb.pitt.edu/">Visit</a></p>
<p>N. Rego and D. Koes (2015) 3Dmol.js molecular visualization with webgl. <a style="font-style: italic;">Bioinformatics, 31(8)</a> 1322-1324</p>
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