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feeder.py
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feeder.py
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###################################################################
# Reference: https://github.com/Zhongdao/gcn_clustering
# A modified version of the reference above
#
# File Name: feeder.py
# Author: Jayson Ng
# Email: iamjaysonph@gmail.com
###################################################################
import numpy as np
import random
import json
import torch
import torch.utils.data as data
class Feeder(data.Dataset):
'''
Generate a sub-graph from the feature graph centered at some node,
and now the sub-graph has a fixed depth, i.e. 2
'''
def __init__(self, feat_path, knn_graph_path, label_path, obj_type_path, seed=1,
k_at_hop=[200,5], active_connection=5, train=True):
'''
active_connection: parameter u for selecting top uNN
'''
np.random.seed(seed)
random.seed(seed)
self.features = self.read_json(feat_path)
self.knn_graph = [[node_neighs[:k_at_hop[0]+1] for node_neighs in frame_g] for frame_g in self.read_json(knn_graph_path)]
self.labels = self.read_json(label_path)
self.obj_types = self.read_json(obj_type_path)
self.num_samples = len(self.features)
self.depth = len(k_at_hop)
self.k_at_hop = k_at_hop
self.active_connection = active_connection
self.train = train
assert np.mean(k_at_hop)>=active_connection
def __len__(self):
return self.num_samples
def read_json(self, path):
with open(path, 'r') as f:
data = json.load(f)
return data
def __getitem__(self, index):
'''
Only support single graph training at each iteration (batch size = 1) due to imcompatible shapes of different graphs.
Args:
- index: int
indicating which graph to use
'''
frame_features = np.array(self.features[index])
frame_graph = np.array(self.knn_graph[index])
frame_labels = np.array(self.labels[index])
frame_objs = np.array(self.obj_types[index])
if self.train:
b_feat, b_A_, b_center_idx, b_one_hop_idcs, b_edge_labels, b_obj_masks = [], [], [], [], [], []
for node_i in range(frame_features.shape[0]):
feat, A_, center_idx, one_hop_idcs, edge_labels, obj_mask = self.get_ips_of_node_i(node_i, frame_features, frame_graph, frame_labels, frame_objs)
b_feat.append(feat)
b_A_.append(A_)
b_center_idx.append(center_idx)
b_one_hop_idcs.append(one_hop_idcs)
b_edge_labels.append(edge_labels)
b_obj_masks.append(obj_mask)
b_feat = torch.stack(b_feat)
b_A_ = torch.stack(b_A_)
b_center_idx = torch.stack(b_center_idx)
b_one_hop_idcs = torch.stack(b_one_hop_idcs)
b_edge_labels = torch.stack(b_edge_labels)
b_obj_masks = torch.stack(b_obj_masks)
return b_feat, b_A_, b_center_idx, b_one_hop_idcs, b_edge_labels, b_obj_masks
else:
b_feat, b_A_, b_center_idx, b_one_hop_idcs, b_unique_nodes_list, b_edge_labels, b_obj_masks = [], [], [], [], [], [], []
for node_i in range(frame_features.shape[0]):
feat, A_, center_idx, one_hop_idcs, unique_nodes_list, edge_labels, obj_mask = self.get_ips_of_node_i(node_i, frame_features, frame_graph, frame_labels, frame_objs)
b_feat.append(feat)
b_A_.append(A_)
b_center_idx.append(center_idx)
b_one_hop_idcs.append(one_hop_idcs)
b_unique_nodes_list.append(unique_nodes_list)
b_edge_labels.append(edge_labels)
b_obj_masks.append(obj_mask)
b_feat = torch.stack(b_feat)
b_A_ = torch.stack(b_A_)
b_center_idx = torch.stack(b_center_idx)
b_one_hop_idcs = torch.stack(b_one_hop_idcs)
b_unique_nodes_list = torch.stack(b_unique_nodes_list)
b_edge_labels = torch.stack(b_edge_labels)
b_obj_masks = torch.stack(b_obj_masks)
return b_feat, b_A_, b_center_idx, b_one_hop_idcs, b_unique_nodes_list, b_edge_labels, b_obj_masks
def get_ips_of_node_i(self, node_i: int, frame_features: np.array, frame_graph: np.array, frame_labels: np.array, frame_objs: np.array):
'''
return the vertex feature and the adjacent matrix A, together
with the indices of the center node and its 1-hop nodes
'''
# hops[0] for 1-hop neighbors, hops[1] for 2-hop neighbors
hops = list()
center_node = node_i
hops.append(set(frame_graph[center_node][1:]))
# Actually we dont need the loop since the depth is fixed here,
# But we still remain the code for further revision
for d in range(1,self.depth):
hops.append(set())
for h in hops[-2]:
hops[-1].update(set(frame_graph[h][1:self.k_at_hop[d]+1]))
hops_set = set([h for hop in hops for h in hop])
hops_set.update([center_node,]) # center node included in IPS???
unique_nodes_list = list(hops_set)
unique_nodes_map = {j:i for i,j in enumerate(unique_nodes_list)}
center_idx = torch.Tensor([unique_nodes_map[center_node],]).type(torch.long)
one_hop_idcs = torch.Tensor([unique_nodes_map[i] for i in hops[0]]).type(torch.long)
center_feat = torch.Tensor(frame_features[center_node]).type(torch.float)
feat = torch.Tensor(frame_features[unique_nodes_list]).type(torch.float)
feat = feat - center_feat
max_num_nodes = self.k_at_hop[0] * (self.k_at_hop[1] + 1) + 1
num_nodes = len(unique_nodes_list)
A = torch.zeros(num_nodes, num_nodes)
_, fdim = feat.shape
feat = torch.cat([feat, torch.zeros(max_num_nodes - num_nodes, fdim)], dim=0) # [max_num_nodes, fdim]
# Create Adjacency Matrix
for node in unique_nodes_list:
neighbors = frame_graph[node, 1:self.active_connection+1]
for n in neighbors:
if n in unique_nodes_list:
A[unique_nodes_map[node], unique_nodes_map[n]] = 1
A[unique_nodes_map[n], unique_nodes_map[node]] = 1
D = A.sum(1, keepdim=True)
A = A.div(D)
A_ = torch.zeros(max_num_nodes,max_num_nodes)
A_[:num_nodes,:num_nodes] = A # [max_num_nodes, max_num_nodes]
labels = frame_labels[np.asarray(unique_nodes_list)]
labels = torch.from_numpy(labels).type(torch.long)
#edge_labels = labels.expand(num_nodes,num_nodes).eq(
# labels.expand(num_nodes,num_nodes).t())
one_hop_labels = labels[one_hop_idcs]
center_label = labels[center_idx]
edge_labels = (center_label == one_hop_labels).long()
obj_types = frame_objs[np.array(unique_nodes_list)]
obj_types = torch.from_numpy(obj_types).type(torch.long)
one_hop_obj_types = obj_types[one_hop_idcs]
center_obj_type = obj_types[center_idx]
obj_mask = (center_obj_type != one_hop_obj_types).long()
if self.train:
return feat, A_, center_idx, one_hop_idcs, edge_labels, obj_mask
# Testing
unique_nodes_list = torch.Tensor(unique_nodes_list)
unique_nodes_list = torch.cat(
[unique_nodes_list, torch.zeros(max_num_nodes-num_nodes)], dim=0)
return feat, A_, center_idx, one_hop_idcs, unique_nodes_list, edge_labels, obj_mask
def collate_fn(self, data):
data = list(map(lambda x: torch.cat(x, dim=0), zip(*data)))
return data