20180521_sbatch_WXS_pipeline.sh

#!/bin/bash
#
#SBATCH --job-name=wxs-pipeline
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=4
#SBATCH --mem-per-cpu=6G
#SBATCH --partition=compute
#SBATCH --array=0-8

#SAMPLES=(AA14185440 DF11338384 DW11338750 GK11338175 KAJ11333588 LB11332785 ME1333016 PD11337536 BW11337822 DW11337794 EP14185811 JET11333536 KB14185227 Loucy MH11337537 TP14185528)
SAMPLES=(CCRF-CEM_S5 DU-528_S3 JURKAT_S4 KOPT-K1_S1 LOUCY_S7 MOLT-3_S9 P12-ICHIKAWA_S6 PF-382_S2 RPMI-8402_S8)

srun /camp/lab/vanloop/working/demeulj/projects/2016_mansour_ASE_T-ALL/camp_cell_lines_WXS.sh ${SAMPLES[$SLURM_ARRAY_TASK_ID]}