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sudo R CMD INSTALL ./ fails #11

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ghost opened this issue Jun 3, 2016 · 0 comments
Open

sudo R CMD INSTALL ./ fails #11

ghost opened this issue Jun 3, 2016 · 0 comments

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@ghost
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ghost commented Jun 3, 2016

$ sudo R CMD INSTALL ./

  • installing to library ‘/usr/local/lib/R/site-library’
  • installing source package ‘cudaglmnet’ ...
    configure: checking for critical tools used by configure
    checking "environment variable COMPILER_BINDIR"... "COMPILER_BINDIR not set; using user's default path"
    checking "environment variable CUDA_HOME"... "CUDA_HOME not set; using default /usr/local/cuda"
    checking "environment variable CULA_HOME"... "CULA_HOME not set; using default /usr/local/cula"
    checking for /usr/local/cuda/bin/nvcc... yes
    "nvcc found"
    checking "whether this is the 64 bit linux version of CUDA"... checking for /usr/local/cuda/lib64/libcublas.so... yes
    "yes -- using /usr/local/cuda/lib64 for CUDA libs"
    "using -I/usr/share/R/include for R header files"
    "using -L/usr/lib/R/lib -lR for R shared libraries"
    checking "whether this is the 64 bit version of CULA"... checking for /usr/local/cula/lib64/libcula.so... no
    checking for /usr/local/cula/lib64/libcula.dylib... no
    "no"
    checking "checking whether cula is present at all"... checking for /usr/local/cula/lib/libcula.so... no
    checking for /usr/local/cula/lib/libcula.dylib... no
    "cula is not installed"
    configure: determining host platform
    checking build system type... x86_64-unknown-linux-gnu
    checking host system type... x86_64-unknown-linux-gnu
    configure: creating ./config.status
    config.status: creating src/Makefile
    ** libs
    ** arch -
    make: Nothing to be done for `all'.
    installing to /usr/local/lib/R/site-library/cudaglmnet/libs
    ** R
    ** preparing package for lazy loading
    ** help
    *** installing help indices
    ** building package indices
    ** testing if installed package can be loaded
    Error in dyn.load(file, DLLpath = DLLpath, ...) :
    unable to load shared object '/usr/local/lib/R/site-library/cudaglmnet/libs/cudaglmnet.so':
    libcublas.so.7.5: cannot open shared object file: No such file or directory
    Error: loading failed
    Execution halted
    ERROR: loading failed
  • removing ‘/usr/local/lib/R/site-library/cudaglmnet’
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