degenerate_na.h

// ThermonucleotideBLAST
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#ifndef __DEGENERATE_NA
#define __DEGENERATE_NA

#include <string>
#include <list>

// M = A or C
// R = G or A
// S = G or C
// V = G or C or A
// W = A or T
// Y = T or C
// H = A or C or T
// K = G or T
// D = G or A or T
// B = G or T or C
// N = A or T or C or G

std::list<std::string> expand_nucleic_acid(const std::string &m_seq);
std::list< std::pair<std::string, std::string> > 
	expand_nucleic_acid(const std::list< std::pair<std::string, std::string> > &m_seq);

unsigned int degeneracy(const std::string &m_oligo);

#endif // __DEGENERATE_NA