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10X prediction example #43

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kasperdanielhansen opened this issue Sep 10, 2020 · 1 comment
Open

10X prediction example #43

kasperdanielhansen opened this issue Sep 10, 2020 · 1 comment

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@kasperdanielhansen
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IMPORTANT

The package could benefit a TON by demonstrating peco on a separate 10X dataset. We have plenty available in Bioconductor. Perhaps look in TENxPBMCData for something small (~4k cells). This will show a user how you need to deal with gene names, normalization etc etc. and also show an application to 10X.

@pcarbo
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pcarbo commented Nov 10, 2020

@jdblischak @jhsiao999 Would either of you be able to put together a peco example using the TENxPBMCData? If one of you could put together an R script, I could rework it into a vignette.

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