explore.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/nas/home/gujiashe/miniconda3/envs/knowbert/lib/python3.6/site-packages/sklearn/utils/linear_assignment_.py:22: FutureWarning: The linear_assignment_ module is deprecated in 0.21 and will be removed from 0.23. Use scipy.optimize.linear_sum_assignment instead.\n",
      "  FutureWarning)\n",
      "/nas/home/gujiashe/miniconda3/envs/knowbert/lib/python3.6/site-packages/allennlp/data/token_indexers/token_characters_indexer.py:51: UserWarning: You are using the default value (0) of `min_padding_length`, which can cause some subtle bugs (more info see https://github.com/allenai/allennlp/issues/1954). Strongly recommend to set a value, usually the maximum size of the convolutional layer size when using CnnEncoder.\n",
      "  UserWarning)\n"
     ]
    }
   ],
   "source": [
    "%load_ext autoreload\n",
    "%autoreload 2\n",
    "from allennlp.commands.evaluate import *\n",
    "from kb.include_all import *\n",
    "from allennlp.nn import util as nn_util\n",
    "from allennlp.common.tqdm import Tqdm\n",
    "import torch\n",
    "import warnings\n",
    "warnings.filterwarnings(\"ignore\")\n",
    "archive_file = \"knowbert_wiki_wordnet_model\"\n",
    "cuda_device = -1\n",
    "# line = \"banana\\tcolor\\tyellow\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "# import logging\n",
    "\n",
    "# logger = logging.getLogger()  # 不加名称设置root logger\n",
    "# logger.setLevel(logging.INFO)\n",
    "# formatter = logging.Formatter(\n",
    "#     '%(asctime)s - %(name)s - %(levelname)s: - %(message)s',\n",
    "#     datefmt='%Y-%m-%d %H:%M:%S')\n",
    "\n",
    "# # 使用FileHandler输出到文件\n",
    "# fh = logging.FileHandler('log.txt')\n",
    "# fh.setLevel(logging.DEBUG)\n",
    "# fh.setFormatter(formatter)\n",
    "\n",
    "# # 使用StreamHandler输出到屏幕\n",
    "# ch = logging.StreamHandler()\n",
    "# ch.setLevel(logging.DEBUG)\n",
    "# ch.setFormatter(formatter)\n",
    "\n",
    "# # 添加两个Handler\n",
    "# logger.addHandler(ch)\n",
    "# logger.addHandler(fh)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "archive = load_archive(archive_file, cuda_device)\n",
    "config = archive.config\n",
    "prepare_environment(config)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [],
   "source": [
    "config = Params.from_file(\"/nas/home/gujiashe/kb/knowbert_wiki_wordnet_model/config.json\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "reader_params = config.pop('dataset_reader')\n",
    "if reader_params['type'] == 'multitask_reader':\n",
    "    reader_params = reader_params['dataset_readers']['language_modeling']\n",
    "# reader_params['num_workers'] = 0\n",
    "validation_reader_params = {\n",
    "    \"type\": \"kg_probe\",\n",
    "    \"tokenizer_and_candidate_generator\": reader_params['base_reader']['tokenizer_and_candidate_generator'].as_dict()\n",
    "}\n",
    "dataset_reader = DatasetReader.from_params(Params(validation_reader_params))\n",
    "\n",
    "vocab = dataset_reader._tokenizer_and_candidate_generator.bert_tokenizer.vocab\n",
    "token2word = {}\n",
    "for k, v in vocab.items():\n",
    "    token2word[v] = k"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "9960it [00:15, 648.26it/s] "
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Instance with fields:\n",
      " \t tokens: TextField of length 14 with text: \n",
      " \t\t[[CLS], stan, col, ##ly, ##more, plays, [MASK], [MASK], [MASK], [MASK], [MASK], [MASK], [MASK],\n",
      "\t\t[SEP]]\n",
      " \t\tand TokenIndexers : {'tokens': 'SingleIdTokenIndexer'} \n",
      " \t segment_ids: ArrayField with shape: (14,). \n",
      " \t candidates:  \n",
      " \t lm_label_ids: TextField of length 14 with text: \n",
      " \t\t[[CLS], stan, col, ##ly, ##more, plays, for, leicester, city, f, ##., ##c, ##., [SEP]]\n",
      " \t\tand TokenIndexers : {'lm_labels': 'SingleIdTokenIndexer'} \n",
      " \t mask_indicator: ArrayField with shape: (14,). \n",
      "\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "\n"
     ]
    }
   ],
   "source": [
    "dataset_path = \"/nas/home/gujiashe/trans/knowbert_ppl_top10.tsv\"\n",
    "# birth_property = dataset_path.split('_')[1].split('.')[0]\n",
    "instances = dataset_reader.read(dataset_path)\n",
    "print(instances[0])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 33,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "['5 7'\n",
      " 'Selina Keagon gave birth to Cornelius Tuayan Keagon at Monrovia on 06 July 1996 .']\n"
     ]
    }
   ],
   "source": [
    "import pandas as pd\n",
    " \n",
    "# birth_df = pd.read_csv('/nas/home/gujiashe/kb/sentences_birth.tsv', sep='\\t', header = None)\n",
    "birth_df = pd.read_csv(dataset_path, sep='\\t', header = None)\n",
    "\n",
    "birth = birth_df.values\n",
    "print(birth[0])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 34,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "##lina"
      ]
     },
     "execution_count": 34,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "instances[0][\"lm_label_ids\"][2]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 35,
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "2022-03-29 20:39:39 - allennlp.common.from_params - INFO: - instantiating class <class 'allennlp.data.iterators.data_iterator.DataIterator'> from params {'type': 'basic', 'batch_size': 1} and extras set()\n",
      "2022-03-29 20:39:39 - allennlp.common.params - INFO: - type = basic\n",
      "2022-03-29 20:39:39 - allennlp.common.from_params - INFO: - instantiating class <class 'allennlp.data.iterators.basic_iterator.BasicIterator'> from params {'batch_size': 1} and extras set()\n",
      "2022-03-29 20:39:39 - allennlp.common.params - INFO: - batch_size = 1\n",
      "2022-03-29 20:39:39 - allennlp.common.params - INFO: - instances_per_epoch = None\n",
      "2022-03-29 20:39:39 - allennlp.common.params - INFO: - max_instances_in_memory = None\n",
      "2022-03-29 20:39:39 - allennlp.common.params - INFO: - cache_instances = False\n",
      "2022-03-29 20:39:39 - allennlp.common.params - INFO: - track_epoch = False\n",
      "2022-03-29 20:39:39 - allennlp.common.params - INFO: - maximum_samples_per_batch = None\n",
      "2022-03-29 20:39:39 - root - INFO: - Iterating over dataset\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "start\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "100%|██████████| 2292/2292 [06:24<00:00,  5.96it/s]\n"
     ]
    }
   ],
   "source": [
    "import csv\n",
    "model = archive.model\n",
    "model.eval()\n",
    "\n",
    "\n",
    "print(\"start\")\n",
    "# metrics = evaluate(model, instances, iterator, cuda_device, \"\")\n",
    "data_iterator = DataIterator.from_params(Params(\n",
    "    {\"type\": \"basic\", \"batch_size\": 1}\n",
    "))\n",
    "data_iterator.index_with(model.vocab)\n",
    "iterator = data_iterator(instances,\n",
    "                            num_epochs=1,\n",
    "                            shuffle=False)\n",
    "logger.info(\"Iterating over dataset\")\n",
    "generator_tqdm = Tqdm.tqdm(iterator, total=data_iterator.get_num_batches(instances))\n",
    "rows_id = 0\n",
    "# with open('birth3.txt', 'wt') as f:\n",
    "birth_spreadsheet = open(birth_property+\"_spreadsheet_knowbert.tsv\", \"w\")\n",
    "tsv_writer = csv.writer(birth_spreadsheet, delimiter='\\t')\n",
    "\n",
    "total_ranks = []\n",
    "\n",
    "for instance in generator_tqdm:\n",
    "\n",
    "    rows_id+=1\n",
    "\n",
    "    batch = nn_util.move_to_device(instance, cuda_device)\n",
    "    output_dict = model(**batch)\n",
    "    pooled_output = output_dict.get(\"pooled_output\")\n",
    "    contextual_embeddings = output_dict.get(\"contextual_embeddings\")\n",
    "    prediction_scores, seq_relationship_score = model.pretraining_heads(\n",
    "    contextual_embeddings, pooled_output\n",
    "    )\n",
    "    prediction_scores = prediction_scores.view(-1, prediction_scores.shape[-1])\n",
    "    \n",
    "\n",
    "    ranks = torch.argsort(prediction_scores, dim = 1, descending=True)\n",
    "    ranks = torch.argsort(ranks, dim = 1)\n",
    "    vals, idxs = torch.topk(prediction_scores, k = 5, dim = 1)\n",
    "    idxs = idxs.cpu().numpy()\n",
    "    lines = []\n",
    "    # print(\"row: \", rows_id, file=f)\n",
    "    # print(\"================\", file=f)\n",
    "    # print(\"source: \", birth[rows_id - 1, 1], file = f)\n",
    "    masked_tokens = []\n",
    "    for id in range(len(idxs)):\n",
    "        masked_tokens += [token2word[instance[\"tokens\"][\"tokens\"][0][id].item()]]\n",
    "    masked_tokens = \" \".join(masked_tokens[1: -1])\n",
    "    masked_ranks = []\n",
    "    \n",
    "    for k in range(1):\n",
    "        source = []\n",
    "        line = []\n",
    "        for i, idx in enumerate(idxs):\n",
    "            if instance[\"tokens\"][\"tokens\"][0][i] != 103:\n",
    "                line += [token2word[instance[\"tokens\"][\"tokens\"][0][i].item()]]\n",
    "            else:\n",
    "                line += [token2word[idx[k]]]\n",
    "                text_id = instance[\"lm_label_ids\"][\"lm_labels\"][0][i].item()\n",
    "                masked_ranks += [ranks[i][text_id].item()]\n",
    "        \n",
    "        line = \" \".join(line[1: -1])\n",
    "        line = line.split(\" ##\")\n",
    "        line = \"\".join(line)\n",
    "        total_ranks += masked_ranks\n",
    "        masked_ranks = list(map(str, masked_ranks))\n",
    "        masked_ranks = \",\".join(masked_ranks)\n",
    "        # print(\"{}     :  \".format(k) + line, file=f)\n",
    "        # print(\"masked_ranks: \", masked_ranks , file = f)\n",
    "    # print(\"masked_tokens: \", masked_tokens, file = f)\n",
    "    # print(\"================\", file=f)\n",
    "    row = [birth[rows_id - 1, 1], masked_tokens, line, masked_ranks]\n",
    "    \n",
    "    tsv_writer.writerow(row)\n",
    "#     if rows_id>100:\n",
    "#         break\n",
    "birth_spreadsheet.close()\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 36,
   "metadata": {},
   "outputs": [
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on_mouseover_closure(tooltip));\n\n        var icon_img = document.createElement('img');\n        icon_img.src = '_images/' + image + '.png';\n        icon_img.srcset = '_images/' + image + '_large.png 2x';\n        icon_img.alt = tooltip;\n        button.appendChild(icon_img);\n\n        buttonGroup.appendChild(button);\n    }\n\n    if (buttonGroup.hasChildNodes()) {\n        toolbar.appendChild(buttonGroup);\n    }\n\n    var fmt_picker = document.createElement('select');\n    fmt_picker.classList = 'mpl-widget';\n    toolbar.appendChild(fmt_picker);\n    this.format_dropdown = fmt_picker;\n\n    for (var ind in mpl.extensions) {\n        var fmt = mpl.extensions[ind];\n        var option = document.createElement('option');\n        option.selected = fmt === mpl.default_extension;\n        option.innerHTML = fmt;\n        fmt_picker.appendChild(option);\n    }\n\n    var status_bar = document.createElement('span');\n    status_bar.classList = 'mpl-message';\n    toolbar.appendChild(status_bar);\n    this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n    // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n    // which will in turn request a refresh of the image.\n    this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n    properties['type'] = type;\n    properties['figure_id'] = this.id;\n    this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n    if (!this.waiting) {\n        this.waiting = true;\n        this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n    }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n    var format_dropdown = fig.format_dropdown;\n    var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n    fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n    var size = msg['size'];\n    if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n        fig._resize_canvas(size[0], size[1], msg['forward']);\n        fig.send_message('refresh', {});\n    }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n    var x0 = msg['x0'] / fig.ratio;\n    var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n    var x1 = msg['x1'] / fig.ratio;\n    var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n    x0 = Math.floor(x0) + 0.5;\n    y0 = Math.floor(y0) + 0.5;\n    x1 = Math.floor(x1) + 0.5;\n    y1 = Math.floor(y1) + 0.5;\n    var min_x = Math.min(x0, x1);\n    var min_y = Math.min(y0, y1);\n    var width = Math.abs(x1 - x0);\n    var height = Math.abs(y1 - y0);\n\n    fig.rubberband_context.clearRect(\n        0,\n        0,\n        fig.canvas.width / fig.ratio,\n        fig.canvas.height / fig.ratio\n    );\n\n    fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n    // Updates the figure title.\n    fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n    var cursor = msg['cursor'];\n    switch (cursor) {\n        case 0:\n            cursor = 'pointer';\n            break;\n        case 1:\n            cursor = 'default';\n            break;\n        case 2:\n            cursor = 'crosshair';\n            break;\n        case 3:\n            cursor = 'move';\n            break;\n    }\n    fig.rubberband_canvas.style.cursor = cursor;\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n    fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n    // Request the server to send over a new figure.\n    fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n    fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n    for (var key in msg) {\n        if (!(key in fig.buttons)) {\n            continue;\n        }\n        fig.buttons[key].disabled = !msg[key];\n        fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n    }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n    if (msg['mode'] === 'PAN') {\n        fig.buttons['Pan'].classList.add('active');\n        fig.buttons['Zoom'].classList.remove('active');\n    } else if (msg['mode'] === 'ZOOM') {\n        fig.buttons['Pan'].classList.remove('active');\n        fig.buttons['Zoom'].classList.add('active');\n    } else {\n        fig.buttons['Pan'].classList.remove('active');\n        fig.buttons['Zoom'].classList.remove('active');\n    }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n    // Called whenever the canvas gets updated.\n    this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n    return function socket_on_message(evt) {\n        if (evt.data instanceof Blob) {\n            /* FIXME: We get \"Resource interpreted as Image but\n             * transferred with MIME type text/plain:\" errors on\n             * Chrome.  But how to set the MIME type?  It doesn't seem\n             * to be part of the websocket stream */\n            evt.data.type = 'image/png';\n\n            /* Free the memory for the previous frames */\n            if (fig.imageObj.src) {\n                (window.URL || window.webkitURL).revokeObjectURL(\n                    fig.imageObj.src\n                );\n            }\n\n            fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n                evt.data\n            );\n            fig.updated_canvas_event();\n            fig.waiting = false;\n            return;\n        } else if (\n            typeof evt.data === 'string' &&\n            evt.data.slice(0, 21) === 'data:image/png;base64'\n        ) {\n            fig.imageObj.src = evt.data;\n            fig.updated_canvas_event();\n            fig.waiting = false;\n            return;\n        }\n\n        var msg = JSON.parse(evt.data);\n        var msg_type = msg['type'];\n\n        // Call the  \"handle_{type}\" callback, which takes\n        // the figure and JSON message as its only arguments.\n        try {\n            var callback = fig['handle_' + msg_type];\n        } catch (e) {\n            console.log(\n                \"No handler for the '\" + msg_type + \"' message type: \",\n                msg\n            );\n            return;\n        }\n\n        if (callback) {\n            try {\n                // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n                callback(fig, msg);\n            } catch (e) {\n                console.log(\n                    \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n                    e,\n                    e.stack,\n                    msg\n                );\n            }\n        }\n    };\n};\n\n// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n    //this section is from http://www.quirksmode.org/js/events_properties.html\n    var targ;\n    if (!e) {\n        e = window.event;\n    }\n    if (e.target) {\n        targ = e.target;\n    } else if (e.srcElement) {\n        targ = e.srcElement;\n    }\n    if (targ.nodeType === 3) {\n        // defeat Safari bug\n        targ = targ.parentNode;\n    }\n\n    // pageX,Y are the mouse positions relative to the document\n    var boundingRect = targ.getBoundingClientRect();\n    var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n    var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n    return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * http://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n    return Object.keys(original).reduce(function (obj, key) {\n        if (typeof original[key] !== 'object') {\n            obj[key] = original[key];\n        }\n        return obj;\n    }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n    var canvas_pos = mpl.findpos(event);\n\n    if (name === 'button_press') {\n        this.canvas.focus();\n        this.canvas_div.focus();\n    }\n\n    var x = canvas_pos.x * this.ratio;\n    var y = canvas_pos.y * this.ratio;\n\n    this.send_message(name, {\n        x: x,\n        y: y,\n        button: event.button,\n        step: event.step,\n        guiEvent: simpleKeys(event),\n    });\n\n    /* This prevents the web browser from automatically changing to\n     * the text insertion cursor when the button is pressed.  We want\n     * to control all of the cursor setting manually through the\n     * 'cursor' event from matplotlib */\n    event.preventDefault();\n    return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n    // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n    // Prevent repeat events\n    if (name === 'key_press') {\n        if (event.which === this._key) {\n            return;\n        } else {\n            this._key = event.which;\n        }\n    }\n    if (name === 'key_release') {\n        this._key = null;\n    }\n\n    var value = '';\n    if (event.ctrlKey && event.which !== 17) {\n        value += 'ctrl+';\n    }\n    if (event.altKey && event.which !== 18) {\n        value += 'alt+';\n    }\n    if (event.shiftKey && event.which !== 16) {\n        value += 'shift+';\n    }\n\n    value += 'k';\n    value += event.which.toString();\n\n    this._key_event_extra(event, name);\n\n    this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n    return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n    if (name === 'download') {\n        this.handle_save(this, null);\n    } else {\n        this.send_message('toolbar_button', { name: name });\n    }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n    this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n    // Create a \"websocket\"-like object which calls the given IPython comm\n    // object with the appropriate methods. Currently this is a non binary\n    // socket, so there is still some room for performance tuning.\n    var ws = {};\n\n    ws.close = function () {\n        comm.close();\n    };\n    ws.send = function (m) {\n        //console.log('sending', m);\n        comm.send(m);\n    };\n    // Register the callback with on_msg.\n    comm.on_msg(function (msg) {\n        //console.log('receiving', msg['content']['data'], msg);\n        // Pass the mpl event to the overridden (by mpl) onmessage function.\n        ws.onmessage(msg['content']['data']);\n    });\n    return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n    // This is the function which gets called when the mpl process\n    // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n    var id = msg.content.data.id;\n    // Get hold of the div created by the display call when the Comm\n    // socket was opened in Python.\n    var element = document.getElementById(id);\n    var ws_proxy = comm_websocket_adapter(comm);\n\n    function ondownload(figure, _format) {\n        window.open(figure.canvas.toDataURL());\n    }\n\n    var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n    // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n    // web socket which is closed, not our websocket->open comm proxy.\n    ws_proxy.onopen();\n\n    fig.parent_element = element;\n    fig.cell_info = mpl.find_output_cell(\"<div id='\" + id + \"'></div>\");\n    if (!fig.cell_info) {\n        console.error('Failed to find cell for figure', id, fig);\n        return;\n    }\n    fig.cell_info[0].output_area.element.on(\n        'cleared',\n        { fig: fig },\n        fig._remove_fig_handler\n    );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n    var width = fig.canvas.width / fig.ratio;\n    fig.cell_info[0].output_area.element.off(\n        'cleared',\n        fig._remove_fig_handler\n    );\n    fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n    // Update the output cell to use the data from the current canvas.\n    fig.push_to_output();\n    var dataURL = fig.canvas.toDataURL();\n    // Re-enable the keyboard manager in IPython - without this line, in FF,\n    // the notebook keyboard shortcuts fail.\n    IPython.keyboard_manager.enable();\n    fig.parent_element.innerHTML =\n        '<img src=\"' + dataURL + '\" width=\"' + width + '\">';\n    fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n    fig.send_message('closing', msg);\n    // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n    // Turn the data on the canvas into data in the output cell.\n    var width = this.canvas.width / this.ratio;\n    var dataURL = this.canvas.toDataURL();\n    this.cell_info[1]['text/html'] =\n        '<img src=\"' + dataURL + '\" width=\"' + width + '\">';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n    // Tell IPython that the notebook contents must change.\n    IPython.notebook.set_dirty(true);\n    this.send_message('ack', {});\n    var fig = this;\n    // Wait a second, then push the new image to the DOM so\n    // that it is saved nicely (might be nice to debounce this).\n    setTimeout(function () {\n        fig.push_to_output();\n    }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n    var fig = this;\n\n    var toolbar = document.createElement('div');\n    toolbar.classList = 'btn-toolbar';\n    this.root.appendChild(toolbar);\n\n    function on_click_closure(name) {\n        return function (_event) {\n            return fig.toolbar_button_onclick(name);\n        };\n    }\n\n    function on_mouseover_closure(tooltip) {\n        return function (event) {\n            if (!event.currentTarget.disabled) {\n                return fig.toolbar_button_onmouseover(tooltip);\n            }\n        };\n    }\n\n    fig.buttons = {};\n    var buttonGroup = document.createElement('div');\n    buttonGroup.classList = 'btn-group';\n    var button;\n    for (var toolbar_ind in mpl.toolbar_items) {\n        var name = mpl.toolbar_items[toolbar_ind][0];\n        var tooltip = mpl.toolbar_items[toolbar_ind][1];\n        var image = mpl.toolbar_items[toolbar_ind][2];\n        var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n        if (!name) {\n            /* Instead of a spacer, we start a new button group. */\n            if (buttonGroup.hasChildNodes()) {\n                toolbar.appendChild(buttonGroup);\n            }\n            buttonGroup = document.createElement('div');\n            buttonGroup.classList = 'btn-group';\n            continue;\n        }\n\n        button = fig.buttons[name] = document.createElement('button');\n        button.classList = 'btn btn-default';\n        button.href = '#';\n        button.title = name;\n        button.innerHTML = '<i class=\"fa ' + image + ' fa-lg\"></i>';\n        button.addEventListener('click', on_click_closure(method_name));\n        button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n        buttonGroup.appendChild(button);\n    }\n\n    if (buttonGroup.hasChildNodes()) {\n        toolbar.appendChild(buttonGroup);\n    }\n\n    // Add the status bar.\n    var status_bar = document.createElement('span');\n    status_bar.classList = 'mpl-message pull-right';\n    toolbar.appendChild(status_bar);\n    this.message = status_bar;\n\n    // Add the close button to the window.\n    var buttongrp = document.createElement('div');\n    buttongrp.classList = 'btn-group inline pull-right';\n    button = document.createElement('button');\n    button.classList = 'btn btn-mini btn-primary';\n    button.href = '#';\n    button.title = 'Stop Interaction';\n    button.innerHTML = '<i class=\"fa fa-power-off icon-remove icon-large\"></i>';\n    button.addEventListener('click', function (_evt) {\n        fig.handle_close(fig, {});\n    });\n    button.addEventListener(\n        'mouseover',\n        on_mouseover_closure('Stop Interaction')\n    );\n    buttongrp.appendChild(button);\n    var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n    titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n    var fig = event.data.fig;\n    if (event.target !== this) {\n        // Ignore bubbled events from children.\n        return;\n    }\n    fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n    el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n    // this is important to make the div 'focusable\n    el.setAttribute('tabindex', 0);\n    // reach out to IPython and tell the keyboard manager to turn it's self\n    // off when our div gets focus\n\n    // location in version 3\n    if (IPython.notebook.keyboard_manager) {\n        IPython.notebook.keyboard_manager.register_events(el);\n    } else {\n        // location in version 2\n        IPython.keyboard_manager.register_events(el);\n    }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n    var manager = IPython.notebook.keyboard_manager;\n    if (!manager) {\n        manager = IPython.keyboard_manager;\n    }\n\n    // Check for shift+enter\n    if (event.shiftKey && event.which === 13) {\n        this.canvas_div.blur();\n        // select the cell after this one\n        var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n        IPython.notebook.select(index + 1);\n    }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n    fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n    // Return the cell and output element which can be found *uniquely* in the notebook.\n    // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n    // IPython event is triggered only after the cells have been serialised, which for\n    // our purposes (turning an active figure into a static one), is too late.\n    var cells = IPython.notebook.get_cells();\n    var ncells = cells.length;\n    for (var i = 0; i < ncells; i++) {\n        var cell = cells[i];\n        if (cell.cell_type === 'code') {\n            for (var j = 0; j < cell.output_area.outputs.length; j++) {\n                var data = cell.output_area.outputs[j];\n                if (data.data) {\n                    // IPython >= 3 moved mimebundle to data attribute of output\n                    data = data.data;\n                }\n                if (data['text/html'] === html_output) {\n                    return [cell, data, j];\n                }\n            }\n        }\n    }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n    IPython.notebook.kernel.comm_manager.register_target(\n        'matplotlib',\n        mpl.mpl_figure_comm\n    );\n}\n",
      "text/plain": [
       "<IPython.core.display.Javascript object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "<div id='dc898cbb-32ce-45ff-843a-5e41c2f94f91'></div>"
      ],
      "text/plain": [
       "<IPython.core.display.HTML object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "%matplotlib notebook\n",
    "import matplotlib.pyplot as plt\n",
    "plt.hist(total_ranks, bins = 100, range = [0, 100])\n",
    "plt.savefig(birth_property+'_knowbert.jpg')\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
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  "interpreter": {
   "hash": "32459ed5093ebb7fba2e0a98e8ed8c01f1a4aa667381f7e7c3dd05affc8c7846"
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  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
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  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
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   "file_extension": ".py",
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