release: version 1.2.0 🚀

HISTORY.md

@@ -0,0 +1,295 @@
+Changelog
+=========
+
+
+(unreleased)
+------------
+- Debug. [jkobject]
+- Merge pull request #7 from mossjacob/main. [Jérémie Kalfon]
+
+  Fix _index and HGNC symbol indexing
+- Delete mapped and use lamin. [Jacob Moss]
+- Remove strange line which limits genes to those with no hgnc symbol.
+  [Jacob Moss]
+- Fix _index. [Jacob Moss]
+- Update README.md. [Jérémie Kalfon]
+- Additional. [jkobject]
+- Trying out something else. [jkobject]
+- Continue on error. [jkobject]
+- Fix. [jkobject]
+- Needed something else and it is all good. [jkobject]
+- New test. [jkobject]
+- Now to be tested. [jkobject]
+- Update uv. [jkobject]
+
+
+1.1.4 (2024-09-16)
+------------------
+- Release: version 1.1.4 🚀 [maestro-jk]
+- Merge branch 'main' of https://github.com/jkobject/scDataLoader.
+  [maestro-jk]
+- Better preprocess. [jkobject]
+- Better ways to update the sources. [jkobject]
+- Add ruff and uv. [jkobject]
+- Update to uv. [maestro-jk]
+- Merge branch 'main' of https://github.com/jkobject/scDataLoader into
+  main. [jkobject]
+- Making it work. [jkobject]
+- Update website and better populate ontologies. [jkobject]
+- Better tests. [jkobject]
+
+
+1.1.3 (2024-09-04)
+------------------
+- Release: version 1.1.3 🚀 [jkobject]
+- Release should be good to go. [jkobject]
+
+
+1.1.2 (2024-09-04)
+------------------
+- Release: version 1.1.2 🚀 [jkobject]
+- Release. [jkobject]
+
+
+1.1.1 (2024-09-04)
+------------------
+- Release: version 1.1.1 🚀 [jkobject]
+- Nothing really. [jkobject]
+
+
+1.1.0 (2024-09-04)
+------------------
+- Release: version 1.1.0 🚀 [jkobject]
+- Latest lamindb. [jkobject]
+- Debugged. [jkobject]
+- Better linting. [jkobject]
+- Debug ontology loading. [jkobject]
+- Nothing really. [jkobject]
+- Release: version 1.0.5 🚀 [jkobject]
+- Release: version 1.0.4 🚀 [jkobject]
+
+
+1.0.5 (2024-08-14)
+------------------
+- Release: version 1.0.5 🚀 [jkobject]
+- Release: version 1.0.4 🚀 [jkobject]
+
+
+1.0.4 (2024-08-14)
+------------------
+- Release: version 1.0.4 🚀 [jkobject]
+- Debug gene_df. [jkobject]
+
+
+1.0.3 (2024-08-14)
+------------------
+- Release: version 1.0.3 🚀 [jkobject]
+- Debug scdataloader. [jkobject]
+- Update README.md. [Jérémie Kalfon]
+- Adding poetry. [jkobject]
+- Adding tests. [jkobject]
+- Merge branch 'main' of https://github.com/jkobject/scDataLoader into
+  main. [jkobject]
+- Add utils. [jkobject]
+- Debug. [jkobject]
+- Adding tests. [jkobject]
+- Details on lamindb. [jkobject]
+- Tiny doc change. [jkobject]
+- Small update. [jkobject]
+
+
+1.0.1 (2024-08-06)
+------------------
+- Release: version 1.0.1 🚀 [jkobject]
+- Cleanup and making a release. [jkobject]
+
+
+1.0.0 (2024-08-06)
+------------------
+- Release: version 1.0.0 🚀 [jkobject]
+- Release: version  🚀 [jkobject]
+- Cleanup. [jkobject]
+- Debug lamin connection. [jkobject]
+- Bypass attr. [jkobject]
+- No weight scaler. [maestro-jk]
+- Improvement in collator and some refact. [maestro-jk]
+- Multi thread debug. [maestro-jk]
+- Making a predict dataloader. [maestro-jk]
+- Tiny side cases. [jkobject]
+- Merge branch 'main' of https://github.com/jkobject/scDataLoader.
+  [maestro-jk]
+- Making it faster and a tiny debug. [jkobject]
+- Better collator with a setup. [maestro-jk]
+- Merge branch 'main' of https://github.com/jkobject/scDataLoader.
+  [maestro-jk]
+- Add some capabilities. [jkobject]
+- Removing pdbs. [maestro-jk]
+- Merge branch 'main' of https://github.com/jkobject/scDataLoader.
+  [maestro-jk]
+- Merge branch 'main' of https://github.com/jkobject/scDataLoader into
+  main. [jkobject]
+- Cleanup. [jkobject]
+- Decrease prints. [maestro-jk]
+- Works. [maestro-jk]
+- Tiny debug. [maestro-jk]
+- Merge branch 'main' of https://github.com/jkobject/scDataLoader.
+  [maestro-jk]
+- Tiny debug with the update. [jkobject]
+- Quick to remove. [maestro-jk]
+- Update mapped with new lamindb version. [jkobject]
+- Update mapped with new lamindb version. [jkobject]
+
+
+0.4.0 (2024-04-03)
+------------------
+- Merge branch 'main' of https://github.com/jkobject/scDataLoader into
+  main. [jkobject]
+- Merge pull request #5 from
+  jkobject/dependabot/github_actions/softprops/action-gh-release-2.
+  [Jérémie Kalfon]
+
+  Bump softprops/action-gh-release from 1 to 2
+- Bump softprops/action-gh-release from 1 to 2. [dependabot[bot]]
+
+  Bumps [softprops/action-gh-release](https://github.com/softprops/action-gh-release) from 1 to 2.
+  - [Release notes](https://github.com/softprops/action-gh-release/releases)
+  - [Changelog](https://github.com/softprops/action-gh-release/blob/master/CHANGELOG.md)
+  - [Commits](https://github.com/softprops/action-gh-release/compare/v1...v2)
+
+  ---
+  updated-dependencies:
+  - dependency-name: softprops/action-gh-release
+    dependency-type: direct:production
+    update-type: version-update:semver-major
+  ...
+- Release: version 0.7.0 🚀 [jkobject]
+- Merge branch 'dev' into main. [jkobject]
+- Debug to test. [jkobject]
+- Merge branch 'dev' of https://github.com/jkobject/scDataLoader into
+  dev. [jkobject]
+- Commit of current last 3 runs. [maestro-jk]
+- Final improv of preprocess. [jkobject]
+- Debug dataloader post update to the dataset. [maestro-jk]
+- Updating the loading of hundreds of dataset as I go. [jkobject]
+- Loads of preprocessing debug. [jkobject]
+- Making it work for multiple species and debugging loading. [jkobject]
+- Dbug. [jkobject]
+- Debug. [maestro-jk]
+- Tiny debug. [jkobject]
+- Putting things into config and adding something to .mapped()
+  [jkobject]
+- Merge branch 'dev' of https://github.com/jkobject/scDataLoader into
+  dev. [jkobject]
+- Merge branch 'dev' of https://github.com/jkobject/scDataLoader into
+  dev. [maestro-jk]
+- More typings. [maestro-jk]
+- Debug. [jkobject]
+- Debugs to the doc. [jkobject]
+- Building the docs. [jkobject]
+- Finishing the documentation. [jkobject]
+- Review, debug and improvement of the dataloader. [jkobject]
+- Random expressed instead? [jkobject]
+- Merge. [maestro-jk]
+- Some debugs when using different params. [jkobject]
+- Freaking debug. [jkobject]
+- Faster preprocess. [jkobject]
+- Looking into .mapped. [maestro-jk]
+- Improving collator, adding preprocess of more datasets. [jkobject]
+- Adding notebooks. [jkobject]
+- Wip. [jkobject]
+- Updating lamindb. [jkobject]
+- Update README.md. [Jérémie Kalfon]
+- Adding ability for fully offline. [maestro-jk]
+- Update index.md. [Jérémie Kalfon]
+- Update README.md. [Jérémie Kalfon]
+- Updating lamindb. [jkobject]
+- Merge branch 'dev' into main. [jkobject]
+- Cleanup module. [jkobject]
+- More debugs of scDataLoader. [jkobject]
+- Debugs of encoders. [jkobject]
+- Update to map, docstring, and simple AnnDataset. [jkobject]
+- Dataloader debug for hierarchical classes. [jkobject]
+- Debug issue in pyproject. [jkobject]
+- Update README.md. [Jérémie Kalfon]
+
+
+0.3.0 (2024-01-09)
+------------------
+- Update README.md. [Jérémie Kalfon]
+- Update README.md. [Jérémie Kalfon]
+- Remove useless functions. [jkobject]
+- Forgot the dataloader. [jkobject]
+- Some more info. [jkobject]
+- Update README.md. [Jérémie Kalfon]
+- Update lock file. [jkobject]
+- Poetry setup. [jkobject]
+- Debug. [jkobject]
+- Finish doc. [jkobject]
+- Debug. [jkobject]
+- Add new name. [jkobject]
+- Release: version  🚀 [jkobject]
+- More deps. [jkobject]
+- Debug. [jkobject]
+- Debug linter. [jkobject]
+- Bump actions/setup-python from 4 to 5. [dependabot[bot]]
+
+  Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5.
+  - [Release notes](https://github.com/actions/setup-python/releases)
+  - [Commits](https://github.com/actions/setup-python/compare/v4...v5)
+
+  ---
+  updated-dependencies:
+  - dependency-name: actions/setup-python
+    dependency-type: direct:production
+    update-type: version-update:semver-major
+  ...
+- Release: version  🚀 [jkobject]
+- Update. [jkobject]
+- Release: version  🚀 [jkobject]
+- Update LICENSE. [Jérémie Kalfon]
+- Prevent issue. [jkobject]
+- Finish cleanup. [jkobject]
+- Creating the dataloader. [jkobject]
+- Merge pull request #1 from
+  jkobject/dependabot/github_actions/actions/checkout-4. [Jérémie
+  Kalfon]
+
+  Bump actions/checkout from 3 to 4
+- ✅ Ready to clone and code. [dependabot[bot]]
+- Bump actions/checkout from 3 to 4. [dependabot[bot]]
+
+  Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
+  - [Release notes](https://github.com/actions/checkout/releases)
+  - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
+  - [Commits](https://github.com/actions/checkout/compare/v3...v4)
+
+  ---
+  updated-dependencies:
+  - dependency-name: actions/checkout
+    dependency-type: direct:production
+    update-type: version-update:semver-major
+  ...
+- Merge pull request #2 from
+  jkobject/dependabot/github_actions/stefanzweifel/git-auto-commit-
+  action-5. [Jérémie Kalfon]
+
+  Bump stefanzweifel/git-auto-commit-action from 4 to 5
+- ✅ Ready to clone and code. [dependabot[bot]]
+- Bump stefanzweifel/git-auto-commit-action from 4 to 5.
+  [dependabot[bot]]
+
+  Bumps [stefanzweifel/git-auto-commit-action](https://github.com/stefanzweifel/git-auto-commit-action) from 4 to 5.
+  - [Release notes](https://github.com/stefanzweifel/git-auto-commit-action/releases)
+  - [Changelog](https://github.com/stefanzweifel/git-auto-commit-action/blob/master/CHANGELOG.md)
+  - [Commits](https://github.com/stefanzweifel/git-auto-commit-action/compare/v4...v5)
+
+  ---
+  updated-dependencies:
+  - dependency-name: stefanzweifel/git-auto-commit-action
+    dependency-type: direct:production
+    update-type: version-update:semver-major
+  ...
+- ✅ Ready to clone and code. [jkobject]
+- Initial commit. [Jérémie Kalfon]
+
+

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "scdataloader"
-version = "1.1.4"
+version = "1.2.0"
 description = "a dataloader for single cell data in lamindb"
 authors = [
     {name = "jkobject", email = "jkobject@gmail.com"}

scdataloader/VERSION

@@ -1 +1 @@
-1.1.4
+1.2.0