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autoInstall.sh
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#!/bin/bash
# Author: Yongpeng Zhang - zhangyp6603@outlook.com
#
# Description: install WPS,WRF,WRFDA,WRF-Chem.
# If you have any questions, send an e-mail or open an issue.
# Start by
# bash -c "$(curl -fsSL https://raw.githubusercontent.com/jokervTv/auto-install-WRFV4/master/autoInstall.sh)"
# Or (faster in China)
# bash -c "$(curl -fsSL https://gitee.com/jokervTv/auto-install-WRFV4/raw/master/autoInstall.sh)"
# System info
OS_RELEASE="ubuntu"
PACKAGE_MANAGER="apt-get"
MAKE_OPENMP="-j4"
WRF_WPS_OPENMP='-j 4'
TEST_FLAG="0"
SERVER_FLAG="0"
LIB_INSTALL_DIR="$HOME/.WRF_MPAS_LIB"
LOG_DIR="$HOME/log-wrf-mpas"
SRC_DIR="$HOME/src-wrf-mpas"
DOWNLOAD_URL="http://wrflib.jokervtv.top"
CC_VERSION="gcc"
FC_VERSION="gfortran"
CXX_VERSION="g++"
# for ubuntu 2004, there are some bug with openmpi 4.0.3, so change to mpich
MPICC_VERSION="mpicc.mpich"
MPIFC_VERSION="mpifort.mpich"
MPICXX_VERSION="mpic++.mpich"
# Version
OPENMPI_VERSION="openmpi-4.1.1"
ZLIB_VERSION="zlib-1.2.11"
JASPER_VERSION="jasper-2.0.14"
HDF5_VERSION="hdf5-1.13.1"
NETCDF_VERSION="NETCDF-4.7.0"
NETCDF_FORTRAN_VERSION="netcdf-fortran-4.4.5"
BISON_VERSION="bison-3.5.4" #http://ftpmirror.gnu.org/bison/
FLEX_VERSION="flex-2.6.4" #https://github.com/westes/flex
WPS_VERSION="WPS-4.3" #https://github.com/wrf-model/WPS
WRF_VERSION="WRF-4.3" #https://github.com/wrf-model/WRF
WRFplus_VERSION="WRFplus-4.2" #https://github.com/wrf-model/WRF
WRFDA_VERSION="WRFDA-4.2" #https://github.com/wrf-model/WRF
PIO_VERSION="pio-1.7.4" #https://github.com/NCAR/ParallelIO/
PNETCDF_VERSION="pnetcdf-1.11.2" #https://github.com/Parallel-NetCDF/PnetCDF
MPAS_VERSION="MPAS-Model-7.0" #https://github.com/MPAS-Dev/MPAS-Model
# check flag
WRF_INSTALL_FLAG=1
WRF_INSTALL_SUCCESS_FLAG=0
WRF_CHEM_SETTING=0
WRF_KPP_SETTING=0
# download src of lib
wgetSource() {
cd $SRC_DIR
rm -rf $SRC_DIR/$1
rm -f $SRC_DIR/$1.tar.gz*
echo " Download $1"
wget_flag=$(wget -cnv $DOWNLOAD_URL/$1.tar.gz)
echo " Extract $1"
tar -xf $1.tar.gz
cd $SRC_DIR/$1
echo " Configure & make $1"
}
# receivec a lib name as $1 to install or install with testing
makeInstall() {
make $MAKE_OPENMP &>$LOG_DIR/$1.make.log
if [ "$TEST_FLAG" -eq "1" ];then
make check &>$LOG_DIR/$1.check.log
make test &>$LOG_DIR/$1.test.log
fi
make install &>$LOG_DIR/$1.install.log
}
#-------functions start--------
getInfo() {
clear
echo ""
echo " ============================================================== "
echo " \ Autoinstall WRF or MPAS / "
echo " \ URL: https://github.com/jokervTv/auto-install-WRFV4 / "
echo " \ Script Created by Yongpeng Zhang / "
echo " ============================================================== "
echo ""
}
# Check authority
checkRoot() {
[[ $EUID -ne 0 ]] && echo -e "[${red}Error${plain}]: Please run this script with ${red}sudo${plain}!" && exit 1
}
checkSystemInfo() {
if [ -f /etc/redhat-release ]; then
OS_RELEASE="centos"
PACKAGE_MANAGER="yum"
elif cat /etc/issue | grep -Eqi "debian"; then
OS_RELEASE="ubuntu"
PACKAGE_MANAGER="apt-get"
elif cat /etc/issue | grep -Eqi "ubuntu"; then
OS_RELEASE="ubuntu"
PACKAGE_MANAGER="apt-get"
elif cat /etc/issue | grep -Eqi "centos|red hat|redhat"; then
OS_RELEASE="centos"
PACKAGE_MANAGER="yum"
elif cat /proc/version | grep -Eqi "debian"; then
OS_RELEASE="ubuntu"
PACKAGE_MANAGER="apt-get"
elif cat /proc/version | grep -Eqi "ubuntu"; then
OS_RELEASE="ubuntu"
PACKAGE_MANAGER="apt-get"
elif cat /proc/version | grep -Eqi "centos|red hat|redhat"; then
OS_RELEASE="centos"
PACKAGE_MANAGER="apt-get"
PACKAGE_MANAGER="yum"
fi
}
getDir() {
echo "========================================================="
echo "Please enter the library installation directory:"
echo ""
echo "(defualt: $LIB_INSTALL_DIR)"
echo ""
read read_install_dir
if [ -n "$read_install_dir" ]; then
LIB_INSTALL_DIR="$read_install_dir"
fi
mkdir $LIB_INSTALL_DIR
}
checkMem() {
echo ""
echo "========================================================="
echo "Checking the memory size:"
memTotal=`free -gt | grep "Total:" | awk '{print $2}'`
if [[ $memTotal -lt 5 ]]; then
echo "your memory is too small, now add swap file"
swapSize=$((5-$memTotal))
dd if=/dev/zero of=$LIB_INSTALL_DIR/swapfile bs=1G count=$swapSize
mkswap $LIB_INSTALL_DIR/swapfile
sudo chmod 0600 $LIB_INSTALL_DIR/swapfile
sudo swapon $LIB_INSTALL_DIR/swapfile
elif [[ $memTotal -ge 5 ]]; then
echo "Sufficient memory size"
fi
}
getWRFVersion() {
echo "============================================================"
echo "Which version of ${red}WRF${plain} do you want to use ? (defualt: 2)"
echo ""
echo " 0. 3.9.1.1"
echo " 1. 4.2"
echo " 2. 4.3"
read compier_index
if [ -n "$compier_index" ]; then
if [[ $compier_index -eq 0 ]]; then
WRF_VERSION="WRF-3.9.1.1"
WRFplus_VERSION="WRFplus-3.9.1.1"
WRFDA_VERSION="WRFDA-3.9.1.1"
elif [[ $compier_index -eq 1 ]]; then
WRF_VERSION="WRF-4.2"
WRFplus_VERSION="WRFplus-4.2"
WRFDA_VERSION="WRFDA-4.2"
elif [[ $compier_index -eq 2 ]]; then
WRF_VERSION="WRF-4.3"
WRFplus_VERSION="WRFplus-4.3"
WRFDA_VERSION="WRFDA-4.3"
fi
fi
}
getWPSVersion() {
echo "============================================================"
echo "Which version of ${red}WPS${plain} do you want to use ? (defualt: 2)"
echo ""
echo " 0. 3.9.1"
echo " 1. 4.2"
echo " 2. 4.3"
read compier_index
if [ -n "$compier_index" ]; then
if [[ $compier_index -eq 0 ]]; then
WPS_VERSION="WPS-3.9.1"
elif [[ $compier_index -eq 1 ]]; then
WPS_VERSION="WPS-4.2"
elif [[ $compier_index -eq 2 ]]; then
WPS_VERSION="WPS-4.3"
fi
fi
}
getCompiler() {
echo "============================================================"
echo "Which compiler do you want to use ? (defualt: 1)"
echo ""
echo " 1. GUN (gcc/gfortran)"
echo " 2. Intel oneAPI"
read compier_index
if [ -n "$compier_index" ]; then
if [[ $compier_index -eq 2 ]]; then
CC_VERSION="icc"
FC_VERSION="ifort"
CXX_VERSION="icpc"
MPICC_VERSION="mpiicc"
MPIFC_VERSION="mpiifort"
MPICXX_VERSION="mpiicpc"
export CC=$CC_VERSION
export CXX=$CXX_VERSION
export FC=$FC_VERSION
fi
fi
}
getOpenmp() {
echo "============================================================"
echo "How many physical cores do you wan to use ? (defualt: 4)"
echo "If you know nothing about this, please input 0 or just hit enter."
echo ""
read cores_number
if [ -n "$cores_number" ]; then
if [ $cores_number -ne 0 ]; then
MAKE_OPENMP="-j$cores_number"
WRF_WPS_OPENMP="-j $cores_number"
fi
fi
}
reSetEnv() {
echo '' >> $HOME/.bashrc
echo "###############################################" >> $HOME/.bashrc
echo "# START for WRF or MPAS automatic installation" >> $HOME/.bashrc
echo '' >> $HOME/.bashrc
echo "#for $ZLIB_VERSION" >> $HOME/.bashrc
echo 'export LD_LIBRARY_PATH='$LIB_INSTALL_DIR'/'$ZLIB_VERSION'/lib:$LD_LIBRARY_PATH' >> $HOME/.bashrc
echo '' >> $HOME/.bashrc
echo "#for $JASPER_VERSION" >> $HOME/.bashrc
echo "export JASPER=$LIB_INSTALL_DIR/$JASPER_VERSION" >> $HOME/.bashrc
echo "export JASPERLIB=$TEMP_JASPER_LIB_DIR" >> $HOME/.bashrc
echo "export JASPERINC=$LIB_INSTALL_DIR/$JASPER_VERSION/include" >> $HOME/.bashrc
echo 'export LD_LIBRARY_PATH='$LIB_INSTALL_DIR'/'$JASPER_VERSION'/lib:$LD_LIBRARY_PATH' >> $HOME/.bashrc
echo '' >> $HOME/.bashrc
echo "#for $HDF5_VERSION" >> $HOME/.bashrc
echo 'export LD_LIBRARY_PATH='$LIB_INSTALL_DIR'/'$HDF5_VERSION'/lib:$LD_LIBRARY_PATH' >> $HOME/.bashrc
echo '' >> $HOME/.bashrc
echo "#for $NETCDF_VERSION" >> $HOME/.bashrc
echo 'export PATH='$LIB_INSTALL_DIR'/'$NETCDF_VERSION'/bin:$PATH' >> $HOME/.bashrc
echo "export NETCDF=$LIB_INSTALL_DIR/$NETCDF_VERSION" >> $HOME/.bashrc
echo 'export LD_LIBRARY_PATH='$LIB_INSTALL_DIR'/'$NETCDF_VERSION'/lib:$LD_LIBRARY_PATH' >> $HOME/.bashrc
}
getTest() {
echo "============================================================"
echo "do you wanna make test or check ? (defualt: no)"
echo "0.no"
echo "1.yes"
read read_test_flag
if [ -n "$read_test_flag" ]; then
if [[ $read_test_flag -eq 1 ]];then
TEST_FLAG="$read_test_flag"
fi
fi
}
# Change sources
setSources() {
echo "=============================================="
echo "Do you wanna change software sources (Recommended for Mainland China)?"
echo ""
echo " 1. yes"
echo " 0. no, nothing to change (default)"
echo ""
echo "If you know nothing about this, please input 0"
willness="0"
read willness
if [ -n "$willness" ] ;then
if [[ $willness -eq 1 ]];then
sudo -s bash -c "/bin/bash <(curl -sSL https://gitee.com/SuperManito/LinuxMirrors/raw/main/ChangeMirrors.sh)"
fi
fi
echo "==============================================="
}
chooseFeatures() {
echo "=============================================="
echo "Which option do you wanna choose ?"
echo ""
echo " 1. WPS, WRF:em_real"
if [ "$OS_RELEASE" == "centos" ];then
echo " 2. WPS, WRF:em_real, WRF-chem (with Kpp)"
echo " 3. WPS, WRF:em_real, WRF-hydro (support soon, NOT currently supported)"
elif [ "$OS_RELEASE" == "ubuntu" ];then
echo " 2. WPS, WRF:em_real, WRF-chem (without Kpp)"
echo " 3. WPS, WRF:em_real, WRF-hydro"
fi
echo " 4. WPS, WRF:em_real, WRFDA:4dvar"
echo " 5. MPAS-A 7.0 (Experimental)"
echo " 0. Building Libraries Only"
echo "=============================================="
read read_test_flag
if [ $read_test_flag -eq 0 ];then
WRF_INSTALL_FLAG=0
WRF_INSTALL_SUCCESS_FLAG_SHOULD_BE=0
elif [ $read_test_flag -eq 1 ];then
WRF_INSTALL_FLAG=1
WRF_INSTALL_SUCCESS_FLAG_SHOULD_BE=2
elif [ $read_test_flag -eq 2 ];then
WRF_INSTALL_FLAG=2
WRF_INSTALL_SUCCESS_FLAG_SHOULD_BE=2
elif [ $read_test_flag -eq 3 ];then
WRF_INSTALL_FLAG=3
WRF_INSTALL_SUCCESS_FLAG_SHOULD_BE=2
elif [ $read_test_flag -eq 4 ];then
WRF_INSTALL_FLAG=4
WRF_INSTALL_SUCCESS_FLAG_SHOULD_BE=4
elif [ $read_test_flag -eq 5 ];then
WRF_INSTALL_FLAG=5
#WRF_INSTALL_SUCCESS_FLAG_SHOULD_BE=4
else
echo "input error: please input"
exit 1
fi
echo $WRF_INSTALL_FLAG
}
checkInfo() {
clear
echo ""
echo "Please check the info:"
echo "=========================================================="
echo ""
echo "the following software will be installed in"
echo " ${red} $LIB_INSTALL_DIR ${plain} :"
echo ""
echo $ZLIB_VERSION
echo $JASPER_VERSION
echo $HDF5_VERSION
echo $NETCDF_VERSION
echo $NETCDF_FORTRAN_VERSION
if [[ $WRF_INSTALL_FLAG -eq 2 ]];then
echo $BISON_VERSION
echo $FLEX_VERSION
fi
if [[ $WRF_INSTALL_FLAG -eq 5 ]];then
echo $PIO_VERSION
echo $PNETCDF_VERSION
fi
#echo $WRF_VERSION
#echo $WPS_VERSION
echo ""
echo "=========================================================="
echo ""
if [[ $WRF_INSTALL_FLAG -eq 5 ]];then
echo "MPAS-atmosphere will be installed in ${red} $HOME/MPAS-atmosphere ${plain}"
echo "MPAS-init_atmosphere will be installed in ${red} $HOME/MPAS-init_atmosphere ${plain}"
elif [[ $WRF_INSTALL_FLAG -ne 0 ]];then
echo "WPS will be installed in ${red} $HOME/$WPS_VERSION ${plain}"
echo "WRF will be installed in ${red} $HOME/$WRF_VERSION ${plain}"
if [[ $WRF_INSTALL_FLAG -eq 4 ]];then
echo "WPFplus will be installed in ${red} $HOME/$WRFplus_VERSION ${plain}"
echo "WPFDA will be installed in ${red} $HOME/$WRFDA_VERSION ${plain}"
fi
fi
echo ""
}
# Install essential components
getLibrary() {
echo "=========================================================="
echo -e "\nInstall essential components"
echo "=========================================================="
if [ "$OS_RELEASE" = "ubuntu" ]; then
sudo $PACKAGE_MANAGER -yqq install glibc* libgrib2c0d libgrib2c-dev libjpeg8* libpng16* perl curl
sudo $PACKAGE_MANAGER -yqq install libpng-tools
sudo $PACKAGE_MANAGER -yqq install libpng-devel
sudo $PACKAGE_MANAGER -yqq install libpng-dev
sudo $PACKAGE_MANAGER -yqq install tcsh samba cpp m4 quota
sudo $PACKAGE_MANAGER -yqq install cmake make wget tar
sudo $PACKAGE_MANAGER -yqq install autoconf libtool automake
sudo $PACKAGE_MANAGER -yqq install autopoint gettext
sudo $PACKAGE_MANAGER -yqq install gcc g++ gfortran
sudo $PACKAGE_MANAGER -yqq install libcurl4-openssl-dev libcurl4
sudo $PACKAGE_MANAGER -yqq install git
elif [ "$OS_RELEASE" = "centos" ]; then
sudo $PACKAGE_MANAGER -yqq install libjpeg-turbo libjpeg-turbo-devel
sudo $PACKAGE_MANAGER -yqq install libpng-devel libpng16*
sudo $PACKAGE_MANAGER -yqq install tcsh samba cpp m4 quota
sudo $PACKAGE_MANAGER -yqq install gcc gcc-c++ gcc-gfortran
sudo $PACKAGE_MANAGER -yqq install cmake make wget tar
sudo $PACKAGE_MANAGER -yqq install autoconf libtool automake
sudo $PACKAGE_MANAGER -yqq install gettext-devel gettext
sudo $PACKAGE_MANAGER -yqq install libcurl-devel libcurl curl
sudo $PACKAGE_MANAGER -yqq install git perl
sudo $PACKAGE_MANAGER -yqq install freeglut-devel freeglut
fi
}
# Creat logs and backupfiles
creatLogs() {
mkdir $LOG_DIR
mkdir $SRC_DIR
if [ ! -s $HOME/.bashrc.autoInstall.bak ];then
cp $HOME/.bashrc $HOME/.bashrc.autoInstall.bak.temp
echo '' >> $HOME/.bashrc
echo "###############################################" >> $HOME/.bashrc
echo "# START for WRF or MPAS automatic installation" >> $HOME/.bashrc
fi
}
# Install openMPI
getOpenMPI() {
if [ ! -s "$LIB_INSTALL_DIR/$1/lib/libmpi.so" ]; then
wgetSource $1
CC=$CC_VERSION CXX=$CXX_VERSION FC=$FC_VERSION \
./configure --prefix=$LIB_INSTALL_DIR/$1 &>$LOG_DIR/$1.conf.log
makeInstall $1
if [ ! -s $HOME/.bashrc.autoInstall.bak ];then
echo '' >> $HOME/.bashrc
echo "#for $1" >> $HOME/.bashrc
echo 'export PATH='$LIB_INSTALL_DIR'/'$1'/bin:$PATH' >> $HOME/.bashrc
echo 'export LD_LIBRARY_PATH='$LIB_INSTALL_DIR'/'$1'/lib:$LD_LIBRARY_PATH' >> $HOME/.bashrc
fi
fi
export LD_LIBRARY_PATH=$LIB_INSTALL_DIR/$1/lib:$LD_LIBRARY_PATH
}
# Install zlib
getZilb() {
if [ ! -s "$LIB_INSTALL_DIR/$1/lib/libz.a" ]; then
wgetSource $1
CC=$CC_VERSION CXX=$CXX_VERSION FC=$FC_VERSION \
./configure --prefix=$LIB_INSTALL_DIR/$1 &>$LOG_DIR/$1.conf.log
makeInstall $1
if [ ! -s $HOME/.bashrc.autoInstall.bak ];then
echo '' >> $HOME/.bashrc
echo "#for $1" >> $HOME/.bashrc
echo 'export LD_LIBRARY_PATH='$LIB_INSTALL_DIR'/'$1'/lib:$LD_LIBRARY_PATH' >> $HOME/.bashrc
fi
fi
export LD_LIBRARY_PATH=$LIB_INSTALL_DIR/$1/lib:$LD_LIBRARY_PATH
}
# Install jasper
getJasper() {
if [ "$OS_RELEASE" = "ubuntu" ]; then
TEMP_JASPER_LIB_DIR="$LIB_INSTALL_DIR/$1/lib"
elif [ "$OS_RELEASE" = "centos" ]; then
TEMP_JASPER_LIB_DIR="$LIB_INSTALL_DIR/$1/lib64"
fi
if [ ! -s "$TEMP_JASPER_LIB_DIR/libjasper.so" ]; then
wgetSource $1
CC=$CC_VERSION CXX=$CXX_VERSION FC=$FC_VERSION \
cmake -G "Unix Makefiles" \
-DALLOW_IN_SOURCE_BUILD=TRUE \
-DCMAKE_BUILD_TYPE=Release \
-DJAS_ENABLE_DOC=false \
-DCMAKE_INSTALL_PREFIX=$LIB_INSTALL_DIR/$1 \
&>$LOG_DIR/$1.conf.log
makeInstall $1
if [ ! -s $HOME/.bashrc.autoInstall.bak ];then
echo '' >> $HOME/.bashrc
echo "#for $1" >> $HOME/.bashrc
echo "export JASPER=$LIB_INSTALL_DIR/$1" >> $HOME/.bashrc
echo "export JASPERLIB=$TEMP_JASPER_LIB_DIR" >> $HOME/.bashrc
echo "export JASPERINC=$LIB_INSTALL_DIR/$1/include" >> $HOME/.bashrc
echo 'export LD_LIBRARY_PATH='$LIB_INSTALL_DIR'/'$1'/lib:$LD_LIBRARY_PATH' >> $HOME/.bashrc
fi
fi
export JASPER=$LIB_INSTALL_DIR/$1
export JASPERLIB=$TEMP_JASPER_LIB_DIR
export JASPERINC=$LIB_INSTALL_DIR/$1/include
export LD_LIBRARY_PATH=$TEMP_JASPER_LIB_DIR:$LD_LIBRARY_PATH
}
# Install hdf5
getHDF5() {
if [ ! -s "$LIB_INSTALL_DIR/$1/lib/libhdf5.a" ]; then
export LDFLAGS=-L$LIB_INSTALL_DIR/$ZLIB_VERSION/lib
export CPPFLAGS=-I$LIB_INSTALL_DIR/$ZLIB_VERSION/include
wgetSource $1
CC=$CC_VERSION CXX=$CXX_VERSION FC=$FC_VERSION \
./configure \
--prefix=$LIB_INSTALL_DIR/$HDF5_VERSION \
--with-zlib=$LIB_INSTALL_DIR/$ZLIB_VERSION \
--enable-fortran --enable-cxx \
&>$LOG_DIR/$1.conf.log
makeInstall $1
if [ ! -s $HOME/.bashrc.autoInstall.bak ];then
echo '' >> $HOME/.bashrc
echo "#for $1" >> $HOME/.bashrc
echo 'export LD_LIBRARY_PATH='$LIB_INSTALL_DIR'/'$1'/lib:$LD_LIBRARY_PATH' >> $HOME/.bashrc
echo "export HDF5=$LIB_INSTALL_DIR/$HDF5_VERSION" >> $HOME/.bashrc
fi
fi
export LD_LIBRARY_PATH=$LIB_INSTALL_DIR/$1/lib:$LD_LIBRARY_PATH
export HDF5=$LIB_INSTALL_DIR/$HDF5_VERSION
}
# Install hdf5 with Parallel I/O Support
getHDF5withParallel() {
if [ ! -s "$LIB_INSTALL_DIR/$1/lib/libhdf5.a" ]; then
export LDFLAGS=-L$LIB_INSTALL_DIR/$ZLIB_VERSION/lib
export CPPFLAGS=-I$LIB_INSTALL_DIR/$ZLIB_VERSION/include
wgetSource $1
CC=$MPICC_VERSION CXX=$MPICXX_VERSION FC=$MPIFC_VERSION \
./configure \
--prefix=$LIB_INSTALL_DIR/$HDF5_VERSION \
--with-zlib=$LIB_INSTALL_DIR/$ZLIB_VERSION \
--enable-fortran --enable-parallel --enable-shared \
&>$LOG_DIR/$1.conf.log
makeInstall $1
if [ ! -s $HOME/.bashrc.autoInstall.bak ];then
echo '' >> $HOME/.bashrc
echo "#for $1" >> $HOME/.bashrc
echo 'export LD_LIBRARY_PATH='$LIB_INSTALL_DIR'/'$1'/lib:$LD_LIBRARY_PATH' >> $HOME/.bashrc
echo "export HDF5=$LIB_INSTALL_DIR/$HDF5_VERSION" >> $HOME/.bashrc
fi
fi
export LD_LIBRARY_PATH=$LIB_INSTALL_DIR/$1/lib:$LD_LIBRARY_PATH
export HDF5=$LIB_INSTALL_DIR/$HDF5_VERSION
}
# Install netcdf
getNetCDF() {
if [ ! -s "$LIB_INSTALL_DIR/$1/include/netcdf.inc" ]; then
export CPPFLAGS=-I$LIB_INSTALL_DIR/$HDF5_VERSION/include
export LDFLAGS=-L$LIB_INSTALL_DIR/$HDF5_VERSION/lib
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:$LIB_INSTALL_DIR/$HDF5_VERSION/lib
wgetSource $1
CC=$CC_VERSION CXX=$CXX_VERSION FC=$FC_VERSION \
./configure --prefix=$LIB_INSTALL_DIR/$NETCDF_VERSION --disable-dap &>$LOG_DIR/$1.conf.log
makeInstall $1
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:$LIB_INSTALL_DIR/$1/lib
export CPPFLAGS=-I$LIB_INSTALL_DIR/$1/include
export LDFLAGS=-L$LIB_INSTALL_DIR/$1/lib
wgetSource $2
if [ NETCDF_FORTRAN_VERSION == "netcdf-fortran-4.4.5" ]; then
CC=$CC_VERSION CXX=$CXX_VERSION FC=$FC_VERSION \
FCFLAGS="-w -fallow-argument-mismatch -O2" \
FFLAGS="-w -fallow-argument-mismatch -O2" \
./configure --prefix=$LIB_INSTALL_DIR/$NETCDF_VERSION &>$LOG_DIR/$2.conf.log
else
CC=$CC_VERSION CXX=$CXX_VERSION FC=$FC_VERSION \
./configure --prefix=$LIB_INSTALL_DIR/$NETCDF_VERSION &>$LOG_DIR/$2.conf.log
fi
makeInstall $2
if [ ! -s $HOME/.bashrc.autoInstall.bak ];then
echo '' >> $HOME/.bashrc
echo "#for $1" >> $HOME/.bashrc
echo 'export PATH='$LIB_INSTALL_DIR'/'$1'/bin:$PATH' >> $HOME/.bashrc
echo "export NETCDF=$LIB_INSTALL_DIR/$NETCDF_VERSION" >> $HOME/.bashrc
echo 'export LD_LIBRARY_PATH='$LIB_INSTALL_DIR'/'$1'/lib:$LD_LIBRARY_PATH' >> $HOME/.bashrc
fi
fi
export PATH=$LIB_INSTALL_DIR/$1/bin:$PATH
export LD_LIBRARY_PATH=$LIB_INSTALL_DIR/$1/lib:$LD_LIBRARY_PATH
export NETCDF=$LIB_INSTALL_DIR/$NETCDF_VERSION
}
# Install NetCDF with Parallel I/O Support
getNetCDFwithParallel() {
if [ ! -s "$LIB_INSTALL_DIR/$1/include/netcdf.inc" ]; then
export CPPFLAGS=-I$LIB_INSTALL_DIR/$HDF5_VERSION/include
export LDFLAGS=-L$LIB_INSTALL_DIR/$HDF5_VERSION/lib
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}$LIB_INSTALL_DIR/$HDF5_VERSION/lib
wgetSource $1
CC=$MPICC_VERSION CXX=$MPICXX_VERSION FC=$MPIFC_VERSION \
./configure --prefix=$LIB_INSTALL_DIR/$NETCDF_VERSION --enable-parallel --disable-dap \
&>$LOG_DIR/$1.conf.log
makeInstall $1
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:$LIB_INSTALL_DIR/$1/lib
export CPPFLAGS=-I$LIB_INSTALL_DIR/$1/include
export LDFLAGS=-L$LIB_INSTALL_DIR/$1/lib
wgetSource $2
CC=$MPICC_VERSION CXX=$MPICXX_VERSION FC=$MPIFC_VERSION \
./configure --prefix=$LIB_INSTALL_DIR/$NETCDF_VERSION &>$LOG_DIR/$2.conf.log
makeInstall $2
if [ ! -s $HOME/.bashrc.autoInstall.bak ];then
echo '' >> $HOME/.bashrc
echo "#for $1" >> $HOME/.bashrc
echo 'export PATH='$LIB_INSTALL_DIR'/'$1'/bin:$PATH' >> $HOME/.bashrc
echo "export NETCDF=$LIB_INSTALL_DIR/$NETCDF_VERSION" >> $HOME/.bashrc
echo 'export LD_LIBRARY_PATH='$LIB_INSTALL_DIR'/'$1'/lib:$LD_LIBRARY_PATH' >> $HOME/.bashrc
fi
fi
export PATH=$LIB_INSTALL_DIR/$1/bin:$PATH
export LD_LIBRARY_PATH=$LIB_INSTALL_DIR/$1/lib:$LD_LIBRARY_PATH
export NETCDF=$LIB_INSTALL_DIR/$NETCDF_VERSION
}
# Install bison
getBison() {
if [ ! -s "$LIB_INSTALL_DIR/$1/bin/bison" ]; then
wgetSource $1
CC=$CC_VERSION CXX=$CXX_VERSION FC=$FC_VERSION \
./configure --prefix=$LIB_INSTALL_DIR/$1 &>$LOG_DIR/$1.conf.log
makeInstall $1
if [ ! -s $HOME/.bashrc.autoInstall.bak ];then
echo '' >> $HOME/.bashrc
echo "#for $1" >> $HOME/.bashrc
echo 'export PATH='$LIB_INSTALL_DIR'/'$1'/bin:$PATH' >> $HOME/.bashrc
echo 'export PATH='$LIB_INSTALL_DIR'/'$1':$PATH' >> $HOME/.bashrc
echo "export YACC='yacc -d'" >> $HOME/.bashrc
fi
fi
export PATH=$LIB_INSTALL_DIR/$1:$PATH
export PATH=$LIB_INSTALL_DIR/$1/bin:$PATH
export YACC='yacc -d'
}
# Install flex
getFlex() {
if [ ! -s "$LIB_INSTALL_DIR/$1/bin/flex" ];then
wgetSource $1
./autogen.sh &>$LOG_DIR/$1.autogen.log
# TODO Note: version 2.6.5
# CFLAGS='-g -O2 -D_GNU_SOURCE' because a bug of version 2.6.4
# and will be fixed in 2.6.5
CC=$CC_VERSION CXX=$CXX_VERSION FC=$FC_VERSION \
./configure CFLAGS='-g -O2 -D_GNU_SOURCE' --prefix=$LIB_INSTALL_DIR/$1 &>$LOG_DIR/$1.conf.log
makeInstall $1
if [ ! -s $HOME/.bashrc.autoInstall.bak ];then
echo '' >> $HOME/.bashrc
echo "#for $1" >> $HOME/.bashrc
echo 'export PATH='$LIB_INSTALL_DIR'/'$1'/bin:$PATH' >> $HOME/.bashrc
echo 'export FLEX='$LIB_INSTALL_DIR'/'$1'/bin/flex' >> $HOME/.bashrc
echo "export FLEX_LIB_DIR=$LIB_INSTALL_DIR/$1/lib" >> $HOME/.bashrc
echo "export LD_LIBRARY_PATH=$LIB_INSTALL_DIR/$1/lib:"'$LD_LIBRARY_PATH' >> $HOME/.bashrc
fi
fi
export PATH=$LIB_INSTALL_DIR/$1/bin:$PATH
export FLEX=$LIB_INSTALL_DIR/$1/bin/flex
export FLEX_LIB_DIR=$LIB_INSTALL_DIR/$1/lib
export LD_LIBRARY_PATH=$LIB_INSTALL_DIR/$1/lib:$LD_LIBRARY_PATH
}
# Install PnetCDF
getPnetCDF() {
if [ ! -s "$LIB_INSTALL_DIR/$1/bin/ncmpidiff" ];then
wgetSource $1
autoreconf -i
CC=$MPICC_VERSION CXX=$MPICXX_VERSION FC=$MPIFC_VERSION \
./configure --prefix=$LIB_INSTALL_DIR/$1 \
CFLAGS=-fPIC --enable-shared &>$LOG_DIR/$1.conf.log
#--enable-netcdf4 \
#--with-netcdf4=$LIB_INSTALL_DIR/$NETCDF_VERSION \
makeInstall $1
if [ ! -s $HOME/.bashrc.autoInstall.bak ];then
echo '' >> $HOME/.bashrc
echo "#for $1" >> $HOME/.bashrc
echo "export PNETCDF=$LIB_INSTALL_DIR/$1" >> $HOME/.bashrc
echo 'export PATH='$LIB_INSTALL_DIR'/'$1'/bin:$PATH' >> $HOME/.bashrc
echo 'export LD_LIBRARY_PATH='$LIB_INSTALL_DIR'/'$1'/lib:$LD_LIBRARY_PATH' >> $HOME/.bashrc
fi
fi
export PNETCDF=$LIB_INSTALL_DIR/$1
export PATH=$LIB_INSTALL_DIR/$1/bin:$PATH
export LD_LIBRARY_PATH=$LIB_INSTALL_DIR/$1/lib:$LD_LIBRARY_PATH
}
# Install PIO
getPIO() {
if [ ! -s "$LIB_INSTALL_DIR/$1/lib/libpiof.a" ];then
wgetSource $1
# some bugs in openmpi-4.0.3 in ubuntu 2004
#CC=mpicc.mpich CXX=mpic++.mpich FC=mpifort.mpich \
#cmake . \
# -DNetCDF_C_PATH=$LIB_INSTALL_DIR/$NETCDF_VERSION \
# -DPnetCDF_PATH=$LIB_INSTALL_DIR/$PNETCDF_VERSION \
# -DPnetCDF_Fortran_INCLUDE_DIR=$LIB_INSTALL_DIR/$PNETCDF_VERSION/include \
# -DPIO_HDF5_LOGGING=On -DPIO_USE_MALLOC=On \
# -DCMAKE_INSTALL_PREFIX=$LIB_INSTALL_DIR/$1 \
# &>$LOG_DIR/$1.conf.log
# #-DNetCDF_Fortran_PATH=$LIB_INSTALL_DIR/$NETCDF_VERSION \
export NETCDF_PATH=$LIB_INSTALL_DIR/$NETCDF_VERSION
export PNETCDF_PATH=$LIB_INSTALL_DIR/$PNETCDF_VERSION
export CPPFLAGS="-I$LIB_INSTALL_DIR/$PNETCDF_VERSION/include -I$LIB_INSTALL_DIR/$NETCDF_VERSION/include"
export LDFLAGS="-L$LIB_INSTALL_DIR/$PNETCDF_VERSION/lib -L$LIB_INSTALL_DIR/$NETCDF_VERSION/lib"
CC=$MPICC_VERSION FC=$MPIFC_VERSION ./configure --enable-netcdf4 \
--with-netcdf=$LIB_INSTALL_DIR/$NETCDF_VERSION --prefix=$LIB_INSTALL_DIR/$1 &>$LOG_DIR/$1.config.log
make &>$LOG_DIR/$1.make.log
make install &>$LOG_DIR/$1.install.log
if [ ! -s $HOME/.bashrc.autoInstall.bak ];then
echo '' >> $HOME/.bashrc
echo "#for $1" >> $HOME/.bashrc
echo "export PIO=$LIB_INSTALL_DIR/$1" >> $HOME/.bashrc
echo 'export LD_LIBRARY_PATH='$LIB_INSTALL_DIR'/'$1'/lib:$LD_LIBRARY_PATH' >> $HOME/.bashrc
fi
fi
export PIO=$LIB_INSTALL_DIR/$1
export LD_LIBRARY_PATH=$LIB_INSTALL_DIR/$1/lib:$LD_LIBRARY_PATH
}
# Install WRF/WRF-chem
getWRF() {
if [ ! -s $HOME/.bashrc.autoInstall.bak ];then
echo '' >> $HOME/.bashrc
echo "#for $WRF_VERSION" >> $HOME/.bashrc
echo 'export WRFIO_NCD_LARGE_FILE_SUPPORT=1' >> $HOME/.bashrc
echo "export WRF_CHEM=$WRF_CHEM_SETTING" >> $HOME/.bashrc
echo "export WRF_KPP=$WRF_KPP_SETTING" >> $HOME/.bashrc
mv $HOME/.bashrc.autoInstall.bak.temp $HOME/.bashrc.autoInstall.bak
fi
export WRFIO_NCD_LARGE_FILE_SUPPORT=1
export WRF_CHEM=$WRF_CHEM_SETTING
export WRF_KPP=$WRF_KPP_SETTING
flag=0
for file in $(ls $HOME/$WRF_VERSION/main/*.exe 2>/dev/null)
do
flag=$(( $flag + 1 ))
done
if [[ $flag -ne 4 ]];then
echo "Download WRF"
if [ ! -s $HOME/$WRF_VERSION/configure ];then
if [ ! -s $SRC_DIR/$WRF_VERSION.tar.gz ];then
wgetSource $1
cd $HOME && mv $SRC_DIR/$1 $HOME/
else
tar -xf $1.tar.gz -C $HOME/
fi
fi
cd $HOME/$1
echo " ============================================================== "
echo -e "\nClean\n"
./clean -a &>/dev/null
ulimit -s unlimited
if [ "$CC_VERSION" == "gcc" ];then
echo " ============================================================== "
echo -e "\nConfigure WRF: 34. (dmpar) GNU(gfortran/gcc)"
echo -e '34\n1' | ./configure
echo " ============================================================== "
sed -i 's/-lnetcdff -lnetcdf/-lnetcdff -lnetcdf -lgomp -lpthread/g' ./configure.wrf
sed -i '32s/-ffree-form -O -fno-second-underscore -fconvert=big-endian -frecord-marker=4/-ffree-form -O -fno-second-underscore -fconvert=big-endian -frecord-marker=4 -std=legacy/g' ./configure.wrf
elif [ "$CC_VERSION" == "icc" ];then
echo " ============================================================== "
echo -e "\nConfigure WRF: 15. (dmpar) INTEL (ifort/icc)"
echo -e '15\n1' | ./configure
echo " ============================================================== "
sed -i 's/-lnetcdff -lnetcdf/-lnetcdff -lnetcdf -lgomp -lpthread -liomp5/g' ./configure.wrf
fi
echo -e "\nCompile WRF"
./compile $WRF_WPS_OPENMP em_real &> $LOG_DIR/WRF_em_real.log
flag=0
for file in $(ls $HOME/$WRF_VERSION/main/*.exe)
do
flag=$(( $flag + 1 ))
done
if [[ $flag -eq 4 ]];then
echo -e "\n\nWRF install ${green}successful${plain}\n"
WRF_INSTALL_SUCCESS_FLAG=$(( $WRF_INSTALL_SUCCESS_FLAG + 1 ))
else
echo -e "\nInstall WRF ${red}failed${plain} please check errors in logs($LOG_DIR/)\n"
exit 1
fi
else
echo -e "\nWRF already installed\n"
WRF_INSTALL_SUCCESS_FLAG=$(( $WRF_INSTALL_SUCCESS_FLAG + 1 ))
fi
}
# Install WRFplus
getWRFplus() {
flag=0
for file in $(ls $HOME/$WRFplus_VERSION/run/*.exe 2>/dev/null)
do
flag=$(( $flag + 1 ))
done
if [[ $flag -ne 1 ]];then
echo "Install WRFplus"
if [ ! -s $HOME/$WRFplus_VERSION/configure ];then
if [ ! -s $SRC_DIR/$WRF_VERSION.tar.gz ];then
wgetSource $WRF_VERSION
cd $HOME && cp -r $SRC_DIR/$WRF_VERSION $HOME/$WRFplus_VERSION
else
cp -r $HOME/$WRF_VERSION $HOME/$WRFplus_VERSION
fi
fi
cd $HOME/$1
echo " ============================================================== "
echo -e "\nClean\n"
./clean -a &>/dev/null
ulimit -s unlimited
if [ "$CC_VERSION" == "gcc" ];then
echo " ============================================================== "
echo -e "\nConfigure wrfplus: 18. (dmpar) GNU (gfortran/gcc)"
echo '18' | ./configure wrfplus
echo " ============================================================== "
elif [ "$CC_VERSION" == "icc" ];then
echo " ============================================================== "
echo -e "\nConfigure wrfplus: 8. (dmpar) INTEL (ifort/icc)"
echo '8' | ./configure wrfplus
echo " ============================================================== "
fi
echo -e "\nCompile wrfplus"
sed -i 's/-lnetcdff -lnetcdf/-lnetcdff -lnetcdf -lgomp/g' ./configure.wrf
./compile $WRF_WPS_OPENMP wrfplus &> $LOG_DIR/WRFplus_compile.log
export WRFPLUS_DIR=$HOME/$1
echo "export WRFPLUS_DIR=$HOME/$1" >> $HOME/.bashrc
flag=0
for file in $(ls $HOME/$WRFplus_VERSION/run/*.exe)
do
flag=$(( $flag + 1 ))
done
if [[ $flag -eq 1 ]];then
echo -e "\n\nWRFDA install ${green}successful${plain}\n"
WRF_INSTALL_SUCCESS_FLAG=$(( $WRF_INSTALL_SUCCESS_FLAG + 1 ))
else
echo -e "\nInstall WRFplus ${red}failed${plain} please check errors in logs($LOG_DIR/)\n"
exit 1
fi
else
echo -e "\nWRFplus has been installed\n"
WRF_INSTALL_SUCCESS_FLAG=$(( $WRF_INSTALL_SUCCESS_FLAG + 1 ))
fi
}
# Install WRFDA
getWRFDA() {
flag=0
for file in $(ls $HOME/$WRFDA_VERSION/var/build/*.exe 2>/dev/null)
do
flag=$(( $flag + 1 ))
done
for file in $(ls $HOME/$WRFDA_VERSION/var/obsproc/src/*.exe 2>/dev/null)
do
flag=$(( $flag + 1 ))
done
if [[ $flag -ne 44 ]];then
echo "Install WRFDA"
if [ ! -s $HOME/$WRFDA_VERSION/configure ];then
if [ ! -s $SRC_DIR/$WRF_VERSION.tar.gz ];then
wgetSource $1
cd $HOME && mv $SRC_DIR/$WRF_VERSION $HOME/$WRFDA_VERSION
else
cp -r $HOME/$WRF_VERSION $HOME/$1
fi
fi
cd $HOME/$1
echo " ============================================================== "
echo -e "\nClean\n"
./clean -a &>/dev/null
ulimit -s unlimited
if [ "$CC_VERSION" == "gcc" ];then
echo " ============================================================== "
echo -e "\nConfigure WRFDA: 18. (dmpar) GNU (gfortran/gcc)"
echo '18' | ./configure 4dvar
echo " ============================================================== "
elif [ "$CC_VERSION" == "icc" ];then
echo " ============================================================== "
echo -e "\nConfigure WRFDA: 8. (dmpar) INTEL (ifort/icc)"
echo '8' | ./configure 4dvar
echo " ============================================================== "
fi
echo -e "\nCompile WRFDA with wrfplus"
./compile $WRF_WPS_OPENMP all_wrfvar >& $LOG_DIR/WRFDA_compile.log
flag=0
for file in $(ls $HOME/$WRFDA_VERSION/var/build/*.exe)
do
flag=$(( $flag + 1 ))
done
for file in $(ls $HOME/$WRFDA_VERSION/var/obsproc/src/*.exe 2>/dev/null)
do
flag=$(( $flag + 1 ))
done
if [[ $flag -eq 44 ]];then
echo -e "\n\nWRFDA install ${green}successful${plain}\n"
WRF_INSTALL_SUCCESS_FLAG=$(( $WRF_INSTALL_SUCCESS_FLAG + 1 ))
else
echo -e "\nInstall WRF ${red}failed${plain} please check errors in logs($LOG_DIR/)\n"
exit 1
fi
else
echo -e "\nWRFDA has been installed\n"
WRF_INSTALL_SUCCESS_FLAG=$(( $WRF_INSTALL_SUCCESS_FLAG + 1 ))
fi
}
# Install WRFHydro
getWRFHydro() {
if [ ! -s $HOME/.bashrc.autoInstall.bak ];then
echo '' >> $HOME/.bashrc
echo "#for $WRF_VERSION" >> $HOME/.bashrc
echo 'export WRFIO_NCD_LARGE_FILE_SUPPORT=1' >> $HOME/.bashrc
echo "export WRF_CHEM=$WRF_CHEM_SETTING" >> $HOME/.bashrc
echo "export WRF_KPP=$WRF_KPP_SETTING" >> $HOME/.bashrc
mv $HOME/.bashrc.autoInstall.bak.temp $HOME/.bashrc.autoInstall.bak
fi
export WRF_HYDRO=1
export WRFIO_NCD_LARGE_FILE_SUPPORT=1
flag=0
for file in $(ls $HOME/$WRF_VERSION/main/*.exe 2>/dev/null)
do
flag=$(( $flag + 1 ))
done
if [[ $flag -ne 4 ]];then
echo "Download WRF"
if [ ! -s $HOME/$WRF_VERSION/configure ];then
if [ ! -s $SRC_DIR/$WRF_VERSION.tar.gz ];then
wgetSource $1
cd $HOME && mv $SRC_DIR/$1 $HOME/
else
tar -xf $1.tar.gz -C $HOME/
fi
fi
cd $HOME/$1
source hydro/template/setEnvar.sh
echo " ============================================================== "
echo -e "\nClean\n"
./clean -a &>/dev/null
ulimit -s unlimited
if [ "$CC_VERSION" == "gcc" ];then
echo " ============================================================== "
echo -e "\nConfigure WRF: 34. (dmpar) GNU(gfortran/gcc)"
echo -e '34\n1' | ./configure
echo " ============================================================== "
elif [ "$CC_VERSION" == "icc" ];then
echo " ============================================================== "
echo -e "\nConfigure WRF: 15. (dmpar) INTEL (ifort/icc)"
echo -e '15\n1' | ./configure
echo " ============================================================== "
fi
sed -i 's/-lnetcdff -lnetcdf/-lnetcdff -lnetcdf -lgomp/g' ./configure.wrf
./compile $WRF_WPS_OPENMP em_real &> $LOG_DIR/WRF_em_real.log
flag=0
for file in $(ls $HOME/$WRF_VERSION/main/*.exe)
do
flag=$(( $flag + 1 ))
done
if [[ $flag -eq 4 ]];then
echo -e "\n\nWRF install ${green}successful${plain}\n"
WRF_INSTALL_SUCCESS_FLAG=$(( $WRF_INSTALL_SUCCESS_FLAG + 1 ))
else
echo -e "\nInstall WRF ${red}failed${plain} please check errors in logs($LOG_DIR/)\n"
exit 1
fi
else
echo -e "\nWRF already installed\n"
WRF_INSTALL_SUCCESS_FLAG=$(( $WRF_INSTALL_SUCCESS_FLAG + 1 ))
fi
}
# Install WPS
getWPS() {
flag=0
export WRF_DIR=$HOME/$WRF_VERSION
for file in $(ls $HOME/$WPS_VERSION/util/*.exe 2>/dev/null)
do
flag=$(( $flag + 1 ))
done
for file in $(ls $HOME/$WPS_VERSION/*.exe 2>/dev/null)
do
flag=$(( $flag + 1 ))
done
if [[ $flag -ne 11 ]];then
echo -e "\nInstall WPS"
if [ ! -s $HOME/$WPS_VERSION/configure ];then
if [ ! -s $SRC_DIR/$WPS_VERSION.tar.gz ];then
wgetSource $1
cd $HOME && mv $SRC_DIR/$1 $HOME/
fi
fi
cd $HOME/$1
echo " ============================================================== "
echo -e "\nClean\n"
./clean -a &>/dev/null