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environment_mac.yml
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name: mitnanex
channels:
- bioconda
- conda-forge
dependencies:
- absl-py=2.0.0=pyhd8ed1ab_0
- aiohttp=3.8.6=py310hb372a2b_1
- aiosignal=1.3.1=pyhd8ed1ab_0
- astunparse=1.6.3=pyhd8ed1ab_0
- async-timeout=4.0.3=pyhd8ed1ab_0
- attrs=23.1.0=pyh71513ae_1
- bcftools=1.16=h83fc8ca_1
- blinker=1.7.0=pyhd8ed1ab_0
- brotli-python=1.1.0=py310h9e9d8ca_1
- bzip2=1.0.8=h0d85af4_4
- c-ares=1.21.0=h10d778d_0
- ca-certificates=2023.7.22=h8857fd0_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cachetools=5.3.2=pyhd8ed1ab_0
- cairo=1.16.0=h904041c_1014
- canu=2.2=hbe63672_0
- certifi=2023.7.22=pyhd8ed1ab_0
- cffi=1.16.0=py310hdca579f_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- click=8.1.7=unix_pyh707e725_0
- cryptography=39.0.0=py310h23bb4e6_0
- expat=2.5.0=hf0c8a7f_1
- flatbuffers=2.0.8=hf0c8a7f_1
- flye=2.9.2=py310hae78ebd_2
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h5bb23bf_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fpa=0.5.1=h7d805f9_5
- freetype=2.12.1=h60636b9_2
- fribidi=1.0.10=hbcb3906_0
- frozenlist=1.4.0=py310h6729b98_1
- gast=0.4.0=pyh9f0ad1d_0
- gettext=0.21.1=h8a4c099_0
- gfastats=1.3.6=hdf58011_3
- giflib=5.2.1=hb7f2c08_3
- glib=2.78.0=h7d26f99_0
- glib-tools=2.78.0=h7d26f99_0
- gnuplot=5.4.8=h62d52a3_0
- google-auth=2.23.4=pyhca7485f_0
- google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
- google-pasta=0.2.0=pyh8c360ce_0
- graphite2=1.3.13=h2e338ed_1001
- grpc-cpp=1.47.1=h834a566_7
- grpcio=1.47.1=py310hfe39de7_7
- gsl=2.7=h93259b0_0
- gst-plugins-base=1.22.6=hb5d3a86_2
- gstreamer=1.22.6=h840fbdc_2
- h5py=3.9.0=nompi_py310h7cc7fcd_100
- harfbuzz=6.0.0=h08f8713_0
- hdf5=1.14.0=nompi_h058c35b_103
- htslib=1.16=h567f53e_0
- icu=70.1=h96cf925_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=6.8.0=pyha770c72_0
- intervaltree=3.1.0=pyhd8ed1ab_1
- jpeg=9e=hb7f2c08_3
- k8=0.2.5=hdf58011_4
- keras=2.10.0=pyhd8ed1ab_0
- keras-preprocessing=1.1.2=pyhd8ed1ab_0
- krb5=1.20.1=h0165f36_0
- lerc=4.0.0=hb486fe8_0
- libabseil=20220623.0=cxx17_h844d122_6
- libaec=1.1.2=he965462_1
- libblas=3.9.0=19_osx64_openblas
- libcblas=3.9.0=19_osx64_openblas
- libclang=13.0.1=root_62804_h2961583_3
- libcurl=7.87.0=haf73cf8_0
- libcxx=16.0.6=hd57cbcb_0
- libdeflate=1.13=h775f41a_0
- libedit=3.1.20191231=h0678c8f_2
- libev=4.33=haf1e3a3_1
- libexpat=2.5.0=hf0c8a7f_1
- libffi=3.4.2=h0d85af4_5
- libgd=2.3.3=h1e214de_3
- libgfortran=5.0.0=13_2_0_h97931a8_1
- libgfortran5=13.2.0=h2873a65_1
- libglib=2.78.0=hc62aa5d_0
- libiconv=1.17=hac89ed1_0
- liblapack=3.9.0=19_osx64_openblas
- libllvm13=13.0.1=h64f94b2_2
- libnghttp2=1.51.0=h0dd9d14_0
- libogg=1.3.4=h35c211d_1
- libopenblas=0.3.24=openmp_h48a4ad5_0
- libopus=1.3.1=hc929b4f_1
- libpng=1.6.39=ha978bb4_0
- libpq=15.1=hdbdeef1_3
- libprotobuf=3.21.12=h7d26f99_2
- libsqlite=3.44.0=h92b6c6a_0
- libssh2=1.10.0=h7535e13_3
- libtiff=4.4.0=h5e0c7b4_3
- libvorbis=1.3.7=h046ec9c_0
- libwebp=1.2.4=hfa4350a_0
- libwebp-base=1.2.4=h775f41a_0
- libzlib=1.2.13=h8a1eda9_5
- llvm-openmp=17.0.4=hb6ac08f_0
- mappy=2.26=py310hb0b395c_0
- markdown=3.5.1=pyhd8ed1ab_0
- markupsafe=2.1.3=py310h6729b98_1
- medaka=1.11.1=py310ha7b0be8_0
- miniasm=0.3=h45fc8d7_2
- minimap2=2.26=h45fc8d7_2
- multidict=6.0.4=py310h90acd4f_1
- mysql-common=8.0.32=h7ebae80_0
- mysql-libs=8.0.32=hc37e033_0
- ncurses=6.4=h93d8f39_2
- nomkl=1.0=h5ca1d4c_0
- nspr=4.35=hea0b92c_0
- nss=3.94=hd6ac835_0
- numpy=1.26.0=py310h0171094_0
- oauthlib=3.2.2=pyhd8ed1ab_0
- ont-fast5-api=4.1.1=pyhdfd78af_0
- openjdk=21.0.1=hf4d7fad_0
- openssl=1.1.1w=h8a1eda9_0
- opt_einsum=3.3.0=pyhc1e730c_2
- packaging=23.2=pyhd8ed1ab_0
- pango=1.50.14=hbd9bf65_0
- parasail-python=1.3.4=py310h4b49385_0
- pcre2=10.40=h1c4e4bc_0
- perl=5.32.1=4_h0dc2134_perl5
- perl-filesys-df=0.92=pl5321h2413b67_7
- pip=23.3.1=pyhd8ed1ab_0
- pixman=0.42.2=he965462_0
- porechop=0.2.4=py310hbdf848b_6
- progressbar33=2.4=py_0
- protobuf=4.21.12=py310h7a76584_0
- pyabpoa=1.4.1=py310h2e255e9_0
- pyasn1=0.5.0=pyhd8ed1ab_0
- pyasn1-modules=0.3.0=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pyjwt=2.8.0=pyhd8ed1ab_0
- pyopenssl=23.2.0=pyhd8ed1ab_1
- pysam=0.20.0=py310h958c131_0
- pysocks=1.7.1=pyha2e5f31_6
- pyspoa=0.2.1=py310hae78ebd_0
- python=3.10.8=h4150a38_0_cpython
- python-edlib=1.3.9=py310hbdf848b_4
- python-flatbuffers=23.5.26=pyhd8ed1ab_0
- python_abi=3.10=4_cp310
- pyu2f=0.1.5=pyhd8ed1ab_0
- qt-main=5.15.8=h1d3b3f8_6
- re2=2022.06.01=hb486fe8_1
- readline=8.2=h9e318b2_1
- requests=2.31.0=pyhd8ed1ab_0
- requests-oauthlib=1.3.1=pyhd8ed1ab_0
- rsa=4.9=pyhd8ed1ab_0
- samtools=1.16.1=h7e39424_1
- scipy=1.11.3=py310h2db466d_1
- seqkit=2.5.1=h527b516_0
- setuptools=68.2.2=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.10=h225ccf5_0
- sortedcontainers=2.4.0=pyhd8ed1ab_0
- tar=1.34=hcb2f6ea_1
- tensorboard=2.10.1=pyhd8ed1ab_0
- tensorboard-data-server=0.6.1=py310h23bb4e6_4
- tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
- tensorflow=2.10.0=cpu_py310h22f808f_0
- tensorflow-base=2.10.0=cpu_py310h23d3fc9_0
- tensorflow-estimator=2.10.0=cpu_py310h8b1985b_0
- termcolor=2.3.0=pyhd8ed1ab_0
- tk=8.6.13=hef22860_0
- typing-extensions=4.8.0=hd8ed1ab_0
- typing_extensions=4.8.0=pyha770c72_0
- urllib3=2.0.7=pyhd8ed1ab_0
- werkzeug=3.0.1=pyhd8ed1ab_0
- wheel=0.41.3=pyhd8ed1ab_0
- wrapt=1.15.0=py310h6729b98_1
- wurlitzer=3.0.3=pyhd8ed1ab_0
- xz=5.2.6=h775f41a_0
- yarl=1.9.2=py310hb372a2b_1
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=h8a1eda9_5
- zstd=1.5.5=h829000d_0
- pip:
- biopython==1.81
- joblib==1.3.2
- maturin==1.3.1
- pandas==2.1.2
- python-dateutil==2.8.2
- pytz==2023.3.post1
- scikit-learn==1.3.2
- threadpoolctl==3.2.0
- tomli==2.0.1
- tzdata==2023.3
- utils==0.1.0
prefix: /Users/jjpc/miniforge3/envs/mitnanex