Juan A. Ugalde juanuu@gmail.com
Created on March 27th, 2013.
These are scripts used to analyze the output of orthoMCL. The goal is to annotate each cluster, identify unique clusters in each genome/group, and generate alignments and trees.
The main requirements are Python 2.7 (or higher, but not Python 3), and two libraries:
- PyCogent http://pycogent.org
- Biopython http://biopython.org
In addition, to run the alignment and tree script, muscle and Fasttree need to be installed and accessible globally
Coming soon: A how to guide for the analysis of genomes.