diff --git a/README.md b/README.md index d2e8d72..a4c62c9 100644 --- a/README.md +++ b/README.md @@ -115,7 +115,7 @@ $ ./MissingDataFX.sh INFO | Tue Mar 14 15:35:18 CDT 2017 | Starting MissingDataFX analysis... INFO | Tue Mar 14 15:35:18 CDT 2017 | STEP #1: SETUP AND USER INPUT. -INFO | Tue Mar 14 15:35:18 CDT 2017 | Setting working directory to: /Users/justinbagley/Documents/GitHub/MissingDataFX-master-Feb17/4loci_new_50mil_long_run1-PARTIAL46mill_MrBayes_tree2 +INFO | Tue Mar 14 15:35:18 CDT 2017 | Setting working directory to: /GitHub/MissingDataFX-master/run1 INFO | Tue Mar 14 15:35:18 CDT 2017 | Reading in input NEXUS file(s)... INFO | Tue Mar 14 15:35:18 CDT 2017 | STEP #2: PROCESSING INPUT NEXUS, SPLITTING TAXON LABELS AND DATA BLOCKS INTO SEPARATE FILES. INFO | Tue Mar 14 15:35:18 CDT 2017 | Catostomidae_4loci_new_forMrBayes.NEX @@ -131,7 +131,7 @@ INFO | Tue Mar 14 15:35:19 CDT 2017 | STEP #5: MAKE R SCRIPT THAT A) EXTRAC INFO | Tue Mar 14 15:35:19 CDT 2017 | TABLE (STEP #3) IN WORKING DIR THEN B) TESTS FOR IMPACT OF MISSING DATA ON PHYLO SUPPORT AND BRANCH LENGTHS. INFO | Tue Mar 14 15:35:19 CDT 2017 | STEP #6: RUN THE R SCRIPT (WHICH ALSO SAVES RESULTS TO FILE). INFO | Tue Mar 14 15:35:25 CDT 2017 | STEP #7: CLEANUP: ORGANIZE RESULTS, REMOVE UNNECESSARY FILES. -INFO | Tue Mar 14 15:35:25 CDT 2017 | R workspace file confirmed in dir: /Users/justinbagley/Documents/GitHub/MissingDataFX-master-Feb17/4loci_new_50mil_long_run1-PARTIAL46mill_MrBayes_tree2 +INFO | Tue Mar 14 15:35:25 CDT 2017 | R workspace file confirmed in dir: /GitHub/MissingDataFX-master/run1 INFO | Tue Mar 14 15:35:25 CDT 2017 | Done analyzing the amount and potential effects of missing data on phylogenetic support and branch INFO | Tue Mar 14 15:35:25 CDT 2017 | lengths using MissingDataFX. INFO | Tue Mar 14 15:35:25 CDT 2017 | Bye.