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quiz1.py
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quiz1.py
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# -*- coding: utf-8 -*-
"""
Created on Fri Aug 2 19:31:41 2019
@author: Gerry Dozier
"""
import os
import random
import sys
import math
import numpy as np
import matplotlib.pyplot as plt
# Only for osX
import matplotlib
matplotlib.use('TkAgg')
from mpl_toolkits.mplot3d import Axes3D
from tqdm import *
#
# A Simple Steady-State, Real-Coded Genetic Algorithm
#
class anIndividual:
def __init__(self, specified_chromosome_length):
self.chromosome = []
self.fitness = 0
self.chromosome_length = specified_chromosome_length
def randomly_generate(self,lb, ub):
for i in range(self.chromosome_length):
self.chromosome.append(random.uniform(lb, ub))
self.fitness = 0
def calculate_fitness(self):
x2y2 = self.chromosome[0]**2 + self.chromosome[1]**2
self.fitness = 0.5 + (math.sin(math.sqrt(x2y2))**2 - 0.5) / (1+0.001*x2y2)**2
def print_individual(self, i):
print("Chromosome "+str(i) +": " + str(self.chromosome) + " Fitness: " + str(self.fitness))
class aSimpleExploratoryAttacker:
def __init__(self, population_size, chromosome_length, mutation_rate, lb, ub):
if (population_size < 2):
print("Error: Population Size must be greater than 2")
sys.exit()
self.population_size = population_size
self.chromosome_length = chromosome_length
self.mutation_amt = mutation_rate
self.lb = lb
self.ub = ub
self.mutation_amt = mutation_rate * (ub - lb)
self.population = []
self.hacker_tracker_x = []
self.hacker_tracker_y = []
self.hacker_tracker_z = []
def generate_initial_population(self):
for i in range(self.population_size):
individual = anIndividual(self.chromosome_length)
individual.randomly_generate(self.lb,self.ub)
individual.calculate_fitness()
self.hacker_tracker_x.append(individual.chromosome[0])
self.hacker_tracker_y.append(individual.chromosome[1])
self.hacker_tracker_z.append(individual.fitness)
self.population.append(individual)
def get_worst_fit_individual(self):
worst_fitness = 999999999.0 # For Maximization
worst_individual = -1
for i in range(self.population_size):
if (self.population[i].fitness < worst_fitness):
worst_fitness = self.population[i].fitness
worst_individual = i
return worst_individual
def get_best_fitness(self):
best_fitness = -99999999999.0
best_individual = -1
for i in range(self.population_size):
if self.population[i].fitness > best_fitness:
best_fitness = self.population[i].fitness
best_individual = i
return best_fitness
def evolutionary_cycle(self):
mom = random.randint(0,self.chromosome_length-1)
dad = random.randint(0,self.chromosome_length-1)
kid = self.get_worst_fit_individual()
for j in range(self.chromosome_length):
self.population[kid].chromosome[j] = random.uniform(self.population[mom].chromosome[j],self.population[dad].chromosome[j])
self.population[kid].chromosome[j] += self.mutation_amt * random.gauss(0,1.0)
if self.population[kid].chromosome[j] > self.ub:
self.population[kid].chromosome[j] = self.ub
if self.population[kid].chromosome[j] < self.lb:
self.population[kid].chromosome[j] = self.lb
self.population[kid].calculate_fitness()
self.hacker_tracker_x.append(self.population[kid].chromosome[0])
self.hacker_tracker_y.append(self.population[kid].chromosome[1])
self.hacker_tracker_z.append(self.population[kid].fitness)
def print_population(self):
for i in range(self.population_size):
self.population[i].print_individual(i)
def print_best_max_fitness(self):
best_fitness = -999999999.0 # For Maximization
best_individual = -1
for i in range(self.population_size):
if self.population[i].fitness > best_fitness:
best_fitness = self.population[i].fitness
best_individual = i
print("Best Indvidual: ",str(i)," ", self.population[i].chromosome, " Fitness: ", str(best_fitness))
def plot_evolved_candidate_solutions(self):
fig = plt.figure()
ax1 = fig.add_subplot(1,1,1,projection='3d')
ax1.scatter(self.hacker_tracker_x,self.hacker_tracker_y,self.hacker_tracker_z)
plt.title("Evolved Candidate Solutions")
ax1.set_xlim3d(-100.0,100.0)
ax1.set_ylim3d(-100.0,100.0)
ax1.set_zlim3d(0.2,1.0)
plt.show()
ChromLength = 2
ub = 100.0
lb = -100.0
MaxEvaluations = 4000
plot = 1
PopSize = 1000
mu_amt = 0.0
best_PopSize = 0
best_Mu_Rate = 0
best_Avg_Fitness = -999999999.0
Pops = np.array(list(range(399)))*10+2
Mutations = [0.05, 0.005, 0.0005]
for PopSize in Pops:
for mu_amt in Mutations:
simple_exploratory_attacker = aSimpleExploratoryAttacker(PopSize,ChromLength,mu_amt,lb,ub)
simple_exploratory_attacker.generate_initial_population()
#simple_exploratory_attacker.print_population()
#simple_exploratory_attacker.plot_evolved_candidate_solutions()
tenSumFitness = 0.0
for count in tqdm(range(10)):
for i in range(MaxEvaluations-PopSize+1):
simple_exploratory_attacker.evolutionary_cycle()
#if (i % PopSize == 0):
#if (plot == 1):
#simple_exploratory_attacker.plot_evolved_candidate_solutions()
#print("At Iteration: " + str(i))
#simple_exploratory_attacker.print_population()
if (simple_exploratory_attacker.get_best_fitness() >= 0.99754):
break
tenSumFitness = tenSumFitness + simple_exploratory_attacker.get_best_fitness()
tenSumFitness = tenSumFitness/10.0
del simple_exploratory_attacker
if tenSumFitness > best_Avg_Fitness:
best_Avg_Fitness = tenSumFitness
best_PopSize = PopSize
best_Mu_Rate = mu_amt
print("Best: Pop = "+str(best_PopSize)+" Mu = "+str(best_Mu_Rate) + " Fitness = ",str(best_Avg_Fitness))
#print("\nFinal Population\n")
#simple_exploratory_attacker.print_population()
#simple_exploratory_attacker.print_best_max_fitness()
#print("Function Evaluations: " + str(PopSize+i))
#simple_exploratory_attacker.plot_evolved_candidate_solutions()