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setup.py
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setup.py
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from __future__ import print_function
import sys
import os
import io
try:
from setuptools import setup, find_packages
from setuptools.command.install import install as _install
except ImportError:
from distutils.core import setup
from distutils.command.install import install as _install
def find_packages():
return ['ugali','ugali.analysis','ugali.config','ugali.observation',
'ugali.preprocess','ugali.simulation','ugali.candidate',
'ugali.utils']
import distutils.cmd
import versioneer
VERSION = versioneer.get_version()
NAME = 'ugali'
HERE = os.path.abspath(os.path.dirname(__file__))
URL = 'https://github.com/DarkEnergySurvey/ugali'
DESC = "Ultra-faint galaxy likelihood toolkit."
LONG_DESC = "%s\n%s"%(DESC,URL)
CLASSIFIERS = """\
Development Status :: 4 - Beta
Intended Audience :: Science/Research
Intended Audience :: Developers
License :: OSI Approved :: MIT License
Natural Language :: English
Operating System :: MacOS :: MacOS X
Operating System :: POSIX :: Linux
Programming Language :: Python :: 2
Programming Language :: Python :: 3
Topic :: Scientific/Engineering
Topic :: Scientific/Engineering :: Astronomy
Topic :: Scientific/Engineering :: Physics
"""
RELEASE_URL = URL+'/releases/download/v1.8.0'
UGALIDIR = os.getenv("UGALIDIR","$HOME/.ugali")
ISOSIZE = "~1MB"
CATSIZE = "~20MB"
TSTSIZE = "~1MB"
# Could find file size dynamically, but it's a bit slow...
# int(urllib.urlopen(ISOCHRONES).info().getheaders("Content-Length")[0])/1024**2
SURVEYS = ['des','ps1','sdss','lsst']
MODELS = ['bressan2012','marigo2017','dotter2008','dotter2016']
class ProgressFileIO(io.FileIO):
def __init__(self, path, *args, **kwargs):
self._total_size = os.path.getsize(path)
io.FileIO.__init__(self, path, *args, **kwargs)
def read(self, size):
count = self.tell()/size
self.progress_bar(count,size,self._total_size)
return io.FileIO.read(self, size)
@staticmethod
def progress_bar(count, block_size, total_size):
block = 100*block_size/float(total_size)
progress = count*block
if progress % 5 < 1.01*block:
msg = '\r[{:51}] ({:d}%)'.format(int(progress//2)*'='+'>',int(progress))
sys.stdout.write(msg)
sys.stdout.flush()
class TarballCommand(distutils.cmd.Command,object):
""" Command for downloading data files """
description = "install data files"
user_options = [
('ugali-dir=',None,
'path to install data files [default: %s]'%UGALIDIR),
('force','f',
'force installation (overwrite any existing files)')
]
boolean_options = ['force']
release_url = RELEASE_URL
_tarball = None
_dirname = None
def initialize_options(self):
self.ugali_dir = os.path.expandvars(UGALIDIR)
self.force = False
# Not really the best way, but ok...
self.tarball = self._tarball
self.dirname = self._dirname
def finalize_options(self):
# Required by abstract base class
pass
@property
def path(self):
return os.path.join(self.ugali_dir,self.dirname)
def check_exists(self):
return os.path.exists(self.path)
def install_tarball(self, tarball):
try:
from urllib.request import urlopen, urlretrieve
from urllib.error import HTTPError
except ImportError:
from urllib import urlopen, urlretrieve
from urllib2 import HTTPError
import tarfile
if not os.path.exists(self.ugali_dir):
print("creating %s"%self.ugali_dir)
os.makedirs(self.ugali_dir)
os.chdir(self.ugali_dir)
url = os.path.join(self.release_url,tarball)
print("downloading %s..."%url)
if urlopen(url).getcode() >= 400:
raise Exception('url does not exist')
urlretrieve(url,tarball,reporthook=ProgressFileIO.progress_bar)
print('')
if not os.path.exists(tarball):
raise HTTPError()
print("extracting %s..."%tarball)
with tarfile.open(fileobj=ProgressFileIO(tarball),mode='r:gz') as tar:
## Check if the directory exists?
#if os.path.exists(tar.next().name) and not self.force:
# print("directory found; skipping installation")
tar.extractall()
tar.close()
print('')
print("removing %s"%tarball)
os.remove(tarball)
def run(self):
if self.dry_run:
print("skipping data install")
return
if self.check_exists():
print("found %s"%self.path)
if self.force:
print("overwriting directory")
else:
print("use '--force' to overwrite")
return
self.install_tarball(self.tarball)
class CatalogCommand(TarballCommand):
""" Command for downloading catalog files """
description = "install catalog files"
_tarball = 'ugali-catalogs.tar.gz'
_dirname = 'catalogs'
class TestsCommand(TarballCommand):
""" Command for downloading catalog files """
description = "install test data"
_tarball = 'ugali-test-data.tar.gz'
_dirname = 'testdata'
class IsochroneCommand(TarballCommand):
""" Command for downloading isochrone files """
description = "install isochrone files"
user_options = TarballCommand.user_options + [
('survey=',None,
'survey set [default: None]'),
('model=',None,
'isochrone model [default: None]')
]
_tarball = 'ugali-isochrones-tiny.tar.gz'
_dirname = 'isochrones'
def initialize_options(self):
super(IsochroneCommand,self).initialize_options()
self.survey = None
self.model = None
def finalize_options(self):
super(IsochroneCommand,self).finalize_options()
self._build_surveys()
self._build_models()
def _build_surveys(self):
if self.survey is None:
self.surveys = SURVEYS
else:
self.survey = self.survey.lower()
if self.survey not in SURVEYS:
raise Exception("unrecognized survey: '%s'"%self.survey)
self.surveys = [self.survey]
def _build_models(self):
if self.model is None:
self.models = MODELS
else:
self.model = self.model.lower()
if self.model not in MODELS:
raise Exception("unrecognized model: '%s'"%self.model)
self.models = [self.model]
def run(self):
if self.dry_run:
print("skipping data install")
return
if (self.survey is None) and (self.model is None):
self.tarball = self._tarball
self.dirname = self._dirname
super(IsochroneCommand,self).run()
return
for survey in self.surveys:
for model in self.models:
self.tarball = "ugali-%s-%s.tar.gz"%(survey,model)
self.dirname = "isochrones/%s/%s"%(survey,model)
super(IsochroneCommand,self).run()
class install(_install):
"""
Subclass the setuptools 'install' class.
"""
user_options = _install.user_options + [
('isochrones',None,"install isochrone files (%s)"%ISOSIZE),
('catalogs',None,"install catalog files (%s)"%CATSIZE),
('tests',None,"install test data (%s)"%TSTSIZE),
('ugali-dir=',None,"install file directory [default: %s]"%UGALIDIR),
]
boolean_options = _install.boolean_options + ['isochrones','catalogs']
def initialize_options(self):
_install.initialize_options(self)
self.ugali_dir = os.path.expandvars(UGALIDIR)
self.isochrones = False
self.catalogs = False
self.tests = False
def run(self):
# run superclass install
_install.run(self)
# Could ask user whether they want to install isochrones, but
# pip filters sys.stdout, so the prompt never gets sent:
# https://github.com/pypa/pip/issues/2732#issuecomment-97119093
if self.isochrones:
self.install_isochrones()
if self.catalogs:
self.install_catalogs()
if self.tests:
self.install_tests()
def install_isochrones(self):
"""
Call to isochrone install command:
http://stackoverflow.com/a/24353921/4075339
"""
cmd_obj = self.distribution.get_command_obj('isochrones')
cmd_obj.force = self.force
if self.ugali_dir: cmd_obj.ugali_dir = self.ugali_dir
self.run_command('isochrones')
def install_catalogs(self):
"""
Call to catalog install command:
http://stackoverflow.com/a/24353921/4075339
"""
cmd_obj = self.distribution.get_command_obj('catalogs')
cmd_obj.force = self.force
if self.ugali_dir: cmd_obj.ugali_dir = self.ugali_dir
self.run_command('catalogs')
def install_tests(self):
"""
Call to catalog install command:
http://stackoverflow.com/a/24353921/4075339
"""
cmd_obj = self.distribution.get_command_obj('tests')
cmd_obj.force = self.force
if self.ugali_dir: cmd_obj.ugali_dir = self.ugali_dir
self.run_command('tests')
CMDCLASS = versioneer.get_cmdclass()
CMDCLASS['isochrones'] = IsochroneCommand
CMDCLASS['catalogs'] = CatalogCommand
CMDCLASS['tests'] = TestsCommand
CMDCLASS['install'] = install
setup(
name=NAME,
version=VERSION,
cmdclass=CMDCLASS,
url=URL,
author='Keith Bechtol & Alex Drlica-Wagner',
author_email='bechtol@wisc.edu, kadrlica@fnal.gov',
scripts = [],
install_requires=[
'astropy',
'matplotlib',
'numpy >= 1.9.0',
'scipy >= 0.14.0',
'healpy >= 1.6.0',
'fitsio >= 0.9.10',
'emcee >= 2.1.0',
'corner >= 1.0.0',
'pyyaml >= 3.10',
],
packages=find_packages(),
description=DESC,
long_description=LONG_DESC,
platforms='any',
classifiers = [_f for _f in CLASSIFIERS.split('\n') if _f]
)