You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
=======================================================
/home/travis/build/karel-brinda/rnftools/examples/01_tutorial/03_evaluation/03_evaluation
=======================================================
...
Finished job 9.
10 of 16 steps (62%) done
rule 5:
input: report_SE/0/gp/_combined.gp, report_SE/0/roc/bwa-mem.roc, report_SE/0/roc/bwa-sw.roc
output: report_SE/0/graphics/_combined_0.svg, report_SE/0/graphics/_combined_1.svg, report_SE/0/graphics/_combined_2.svg, report_SE/0/graphics/_combined_3.svg, report_SE/0/graphics/_combined_4.svg, report_SE/0/graphics/_combined_0.pdf, report_SE/0/graphics/_combined_1.pdf, report_SE/0/graphics/_combined_2.pdf, report_SE/0/graphics/_combined_3.pdf, report_SE/0/graphics/_combined_4.pdf, report_SE/0/tar/report_SE.dir 0.tar
jobid: 2
Building DAG of jobs...
Using shell: /bin/bash
Job counts:
count jobs
1 5
1
'report_SE/0/graphics/_combined_0.pdf' was created from 'report_SE/0/graphics/_combined_0.svg' using function 'svg42pdf_cairo'.
'report_SE/0/graphics/_combined_1.pdf' was created from 'report_SE/0/graphics/_combined_1.svg' using function 'svg42pdf_cairo'.
'report_SE/0/graphics/_combined_2.pdf' was created from 'report_SE/0/graphics/_combined_2.svg' using function 'svg42pdf_cairo'.
'report_SE/0/graphics/_combined_3.pdf' was created from 'report_SE/0/graphics/_combined_3.svg' using function 'svg42pdf_cairo'.
'report_SE/0/graphics/_combined_4.pdf' was created from 'report_SE/0/graphics/_combined_4.svg' using function 'svg42pdf_cairo'.
Error in rule 5:
jobid: 0
output: report_SE/0/graphics/_combined_0.svg, report_SE/0/graphics/_combined_1.svg, report_SE/0/graphics/_combined_2.svg, report_SE/0/graphics/_combined_3.svg, report_SE/0/graphics/_combined_4.svg, report_SE/0/graphics/_combined_0.pdf, report_SE/0/graphics/_combined_1.pdf, report_SE/0/graphics/_combined_2.pdf, report_SE/0/graphics/_combined_3.pdf, report_SE/0/graphics/_combined_4.pdf, report_SE/0/tar/report_SE.dir 0.tar
RuleException:
FileNotFoundError in line 52 of /home/travis/miniconda/envs/rnftools/lib/python3.6/site-packages/rnftools/lavender/lavender.snake:
[Errno 2] No such file or directory: 'report_SE/0/gp/bwa-mem.gp'
File "/home/travis/miniconda/envs/rnftools/lib/python3.6/site-packages/rnftools/lavender/lavender.snake", line 52, in __rule_9
File "/home/travis/miniconda/envs/rnftools/lib/python3.6/site-packages/rnftools/lavender/Panel.py", line 371, in create_tar
File "/home/travis/miniconda/envs/rnftools/lib/python3.6/site-packages/rnftools/lavender/Panel.py", line 334, in add_file_to_tar
File "/home/travis/miniconda/envs/rnftools/lib/python3.6/concurrent/futures/thread.py", line 56, in run
Removing output files of failed job 5 since they might be corrupted:
report_SE/0/graphics/_combined_0.svg, report_SE/0/graphics/_combined_1.svg, report_SE/0/graphics/_combined_2.svg, report_SE/0/graphics/_combined_3.svg, report_SE/0/graphics/_combined_4.svg, report_SE/0/graphics/_combined_0.pdf, report_SE/0/graphics/_combined_1.pdf, report_SE/0/graphics/_combined_2.pdf, report_SE/0/graphics/_combined_3.pdf, report_SE/0/graphics/_combined_4.pdf, report_SE/0/tar/report_SE.dir 0.tar
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: /home/travis/build/karel-brinda/rnftools/examples/01_tutorial/03_evaluation/03_evaluation/.snakemake/log/2018-06-27T161917.543517.snakemake.log
make[3]: *** [all] Error 1
make[3]: Leaving directory `/home/travis/build/karel-brinda/rnftools/examples/01_tutorial/03_evaluation/03_evaluation'
make[2]: *** [03_evaluation/] Error 2
make[2]: Leaving directory `/home/travis/build/karel-brinda/rnftools/examples/01_tutorial/03_evaluation'
make[1]: *** [03_evaluation/] Error 2
make[1]: Leaving directory `/home/travis/build/karel-brinda/rnftools/examples/01_tutorial'
make: *** [01_tutorial/] Error 2
make: Leaving directory `/home/travis/build/karel-brinda/rnftools/examples'
The command "make -C examples" exited with 2.
Done. Your build exited with 1.
The build for OSX works, and no change was made to the lavender submodule.
The text was updated successfully, but these errors were encountered:
The build for the devel branch fails with an error which seems not to be related to the changes in such branch:
https://travis-ci.org/karel-brinda/rnftools/jobs/397415103
The build for OSX works, and no change was made to the lavender submodule.
The text was updated successfully, but these errors were encountered: