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Dnatrans.cpp
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Dnatrans.cpp
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/*
GeneDoc: Multiple Sequence Alignment Editing Utility
Copyright (C) 2000, Karl Nicholas
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*/
// dnatrans.cpp : implementation file
//
#include "stdafx.h"
#ifdef _DEBUG
#undef THIS_FILE
static char BASED_CODE THIS_FILE[] = __FILE__;
#endif
/////////////////////////////////////////////////////////////////////////////
// CDNATrans dialog
CDNATrans::CDNATrans(CWnd* pParent /*=NULL*/)
: CDialog(CDNATrans::IDD, pParent)
{
//{{AFX_DATA_INIT(CDNATrans)
m_iReadShift = -1;
m_AltCodon = _T("");
m_AltProt = _T("");
m_AltStart = _T("");
m_TransColumns = -1;
m_TransFixed = -1;
m_TransFltStart = FALSE;
//}}AFX_DATA_INIT
VERIFY(m_Font.CreateFont(12,0,0,0,400,FALSE,FALSE,0,
ANSI_CHARSET,OUT_DEFAULT_PRECIS,
CLIP_DEFAULT_PRECIS,DEFAULT_QUALITY,
FIXED_PITCH,"Courier"));
}
void CDNATrans::DoDataExchange(CDataExchange* pDX)
{
CDialog::DoDataExchange(pDX);
//{{AFX_DATA_MAP(CDNATrans)
DDX_Control(pDX, IDC_TRANSFLTSTART, m_cTransFltStart);
DDX_Control(pDX, IDC_SHIFT0, m_cShift0);
DDX_Control(pDX, IDC_SHIFT2, m_cShift1);
DDX_Control(pDX, IDC_SHIFT1, m_cShift2);
DDX_Control(pDX, IDC_TRANSCOLUMNS, m_cTransColumns);
DDX_Control(pDX, IDC_TRANSFIXEDSTART, m_cTransFixedStart);
DDX_Control(pDX, IDC_LISTCODON, m_listCodon);
DDX_Control(pDX, IDC_COMBCODON, m_comboCodon);
DDX_Radio(pDX, IDC_SHIFT0, m_iReadShift);
DDX_Text(pDX, IDC_ALTCODON, m_AltCodon);
DDX_Text(pDX, IDC_ALTPROT, m_AltProt);
DDV_MaxChars(pDX, m_AltProt, 1);
DDX_Text(pDX, IDC_ALTSTART, m_AltStart);
DDV_MaxChars(pDX, m_AltStart, 1);
DDX_Radio(pDX, IDC_TRANSCOLUMNS, m_TransColumns);
DDX_Radio(pDX, IDC_TRANSFIXED, m_TransFixed);
DDX_Check(pDX, IDC_TRANSFLTSTART, m_TransFltStart);
//}}AFX_DATA_MAP
}
BEGIN_MESSAGE_MAP(CDNATrans, CDialog)
//{{AFX_MSG_MAP(CDNATrans)
ON_CBN_SELCHANGE(IDC_COMBCODON, OnSelchangeCombcodon)
ON_LBN_SELCHANGE(IDC_LISTCODON, OnSelchangeListcodon)
ON_BN_CLICKED(IDC_TRANSFIXED, OnTransfixed)
ON_BN_CLICKED(IDC_TRANSFLOAT, OnTransfloat)
ON_BN_CLICKED(IDC_TRANSCOLUMNS, OnTranscolumns)
ON_BN_CLICKED(IDC_TRANSFIXEDSTART, OnTransfixedstart)
ON_CBN_EDITCHANGE(IDC_COMBCODON, OnEditchangeCombcodon)
ON_EN_CHANGE(IDC_ALTSTART, OnChangeAltstart)
ON_EN_CHANGE(IDC_ALTPROT, OnChangeAltprot)
//}}AFX_MSG_MAP
END_MESSAGE_MAP()
/////////////////////////////////////////////////////////////////////////////
// CDNATrans message handlers
struct DNATrans {
char Name[128];
char Prot[65];
char Start[65];
} iDNATrans[] =
{
{
"Standard" ,
"FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
"-----------------------------------M----------------------------"
},
{
"Vertebrate Mitochondrial" ,
"FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSS**VVVVAAAADDEEGGGG",
"--------------------------------MMMM---------------M------------"
},
{
"Yeast Mitochondrial" ,
"FFLLSSSSYY**CCWWTTTTPPPPHHQQRRRRIIMMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
"-----------------------------------M----------------------------"
},
{
"Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma" ,
"FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
"--MM---------------M------------MMMM---------------M------------"
},
{
"Invertebrate Mitochondrial" ,
"FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSSSVVVVAAAADDEEGGGG",
"---M----------------------------MMMM---------------M------------"
},
{
"Ciliate Nuclear; Dasycladacean Nuclear; Hexamita Nuclear" ,
"FFLLSSSSYYQQCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
"-----------------------------------M----------------------------"
},
{
"Echinoderm Mitochondrial" ,
"FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG",
"-----------------------------------M----------------------------"
},
{
"Euplotid Nuclear" ,
"FFLLSSSSYY**CCCWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
"-----------------------------------M----------------------------"
},
{
"Bacterial" ,
"FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
"---M---------------M------------M--M---------------M------------"
},
{
"Alternative Yeast Nuclear" ,
"FFLLSSSSYY**CC*WLLLSPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
"-------------------M---------------M----------------------------"
},
{
"Ascidian Mitochondrial" ,
"FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSGGVVVVAAAADDEEGGGG",
"-----------------------------------M----------------------------"
},
{
"Flatworm Mitochondrial" ,
"FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG",
"-----------------------------------M----------------------------"
} ,
{
"Blepharisma Macronuclear" ,
"FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
"-----------------------------------M----------------------------"
},{ "", "" }
};
BOOL CDNATrans::OnInitDialog()
{
CDialog::OnInitDialog();
// TODO: Add extra initialization here
if ( m_TransFixed == 0 ) {
OnTransfixed() ;
} else {
OnTransfloat();
}
m_comboCodon.ResetContent();
struct DNATrans *pDNATrans = iDNATrans;
while ( strlen( pDNATrans->Name ) != 0 ) {
m_comboCodon.AddString( pDNATrans->Name);
pDNATrans++;
}
m_comboCodon.SetWindowText( pDoc->m_UserVars.m_DNATransName );
// CComboBox
UpdateListCodon();
return TRUE; // return TRUE unless you set the focus to a control
// EXCEPTION: OCX Property Pages should return FALSE
}
void CDNATrans::UpdateListCodon()
{
// TODO: Add your control notification handler code here
m_listCodon.ResetContent();
m_listCodon.SetFont( &m_Font, FALSE );
char tTran[] = "TCAG";
for ( int i = 0; i < 64; ++ i ) {
CString tStr;
tStr += tTran[i/(64/4)];
tStr += tTran[(i/(64/(4*4)))%4];
tStr += tTran[(i/(64/(4*4*4)))%4];
tStr += " ";
tStr += pDoc->m_UserVars.m_DNATrans[i];
tStr += " ";
tStr += pDoc->m_UserVars.m_DNATransStart[i];
m_listCodon.AddString( tStr );
}
}
void CDNATrans::OnSelchangeCombcodon()
{
struct DNATrans *pDNATrans = iDNATrans;
pDoc->m_UserVars.m_DNATransName = pDNATrans[m_comboCodon.GetCurSel()].Name;
pDoc->m_UserVars.m_DNATrans = pDNATrans[m_comboCodon.GetCurSel()].Prot;
pDoc->m_UserVars.m_DNATransStart = pDNATrans[m_comboCodon.GetCurSel()].Start;
UpdateListCodon();
}
void CDNATrans::OnEditchangeCombcodon()
{
// TODO: Add your control notification handler code here
m_comboCodon.GetWindowText(pDoc->m_UserVars.m_DNATransName);
}
void CDNATrans::OnSelchangeListcodon()
{
// TODO: Add your control notification handler code here
char tTran[] = "TCAG";
int i = m_listCodon.GetCurSel();
if ( i == LB_ERR ) return;
CString tStr;
tStr = tTran[i/(64/4)];
tStr += tTran[(i/(64/(4*4)))%4];
tStr += tTran[(i/(64/(4*4*4)))%4];
m_AltCodon = tStr;
tStr = pDoc->m_UserVars.m_DNATrans[i];
m_AltProt = tStr;
tStr = pDoc->m_UserVars.m_DNATransStart[i];
m_AltStart = tStr;
UpdateData(FALSE);
}
void CDNATrans::OnTransfixed()
{
// TODO: Add your control notification handler code here
UpdateData();
m_cTransColumns.EnableWindow(TRUE);
m_cTransFixedStart.EnableWindow(TRUE);
m_cTransFltStart.EnableWindow(FALSE);
if ( m_TransColumns == 0 ) {
m_cShift0.EnableWindow(TRUE);
m_cShift1.EnableWindow(TRUE);
m_cShift2.EnableWindow(TRUE);
} else {
m_cShift0.EnableWindow(FALSE);
m_cShift1.EnableWindow(FALSE);
m_cShift2.EnableWindow(FALSE);
}
}
void CDNATrans::OnTransfloat()
{
// TODO: Add your control notification handler code here
UpdateData();
m_cTransColumns.EnableWindow(FALSE);
m_cTransFixedStart.EnableWindow(FALSE);
m_cTransFltStart.EnableWindow(TRUE);
m_cShift0.EnableWindow(FALSE);
m_cShift1.EnableWindow(FALSE);
m_cShift2.EnableWindow(FALSE);
}
void CDNATrans::OnTranscolumns()
{
// TODO: Add your control notification handler code here
m_cShift0.EnableWindow(TRUE);
m_cShift1.EnableWindow(TRUE);
m_cShift2.EnableWindow(TRUE);
}
void CDNATrans::OnTransfixedstart()
{
// TODO: Add your control notification handler code here
m_cShift0.EnableWindow(FALSE);
m_cShift1.EnableWindow(FALSE);
m_cShift2.EnableWindow(FALSE);
}
void CDNATrans::OnChangeAltstart()
{
int i = m_listCodon.GetCurSel();
if ( i == LB_ERR ) return;
UpdateData();
if ( m_AltStart.GetLength() == 0 ) return;
pDoc->m_UserVars.m_DNATransStart.SetAt(i, toupper(m_AltStart.GetAt(0)) );
UpdateListCodon();
m_listCodon.SetCurSel(i);
}
void CDNATrans::OnChangeAltprot()
{
int i = m_listCodon.GetCurSel();
if ( i == LB_ERR ) return;
UpdateData();
if ( m_AltProt.GetLength() == 0 ) return;
pDoc->m_UserVars.m_DNATrans.SetAt(i, toupper(m_AltProt.GetAt(0)) );
UpdateListCodon();
m_listCodon.SetCurSel(i);
}