.travis.yml

language: java

matrix:
  include:
    - os: linux
      sudo: required
      dist: trusty
      env: GENOMICSDB_VERSION=0.9.1-proto-3.0.0-beta-1+uuid-static CLASSPATH=$TRAVIS_BUILD_DIR/genomicsdb-${GENOMICSDB_VERSION}-jar-with-dependencies.jar:.
    - os: osx
      osx_image: xcode6.4
      env: GENOMICSDB_VERSION=0.9.1-proto-3.0.0-beta-1+uuid-static CLASSPATH=$TRAVIS_BUILD_DIR/genomicsdb-${GENOMICSDB_VERSION}-jar-with-dependencies.jar:.

install:
  - curl -O http://repo1.maven.org/maven2/com/intel/genomicsdb/${GENOMICSDB_VERSION}/genomicsdb-${GENOMICSDB_VERSION}-jar-with-dependencies.jar
  - curl -O http://repo1.maven.org/maven2/com/intel/genomicsdb/${GENOMICSDB_VERSION}/genomicsdb-${GENOMICSDB_VERSION}.jar
  - bash -x ./run_checks.sh 
  - git clone https://github.com/Intel-HLS/GenomicsDB.git
  #- cd GenomicsDB && git checkout -b 0.8.1 0.8.1 && cd ..

script:
  - javac -d . $TRAVIS_BUILD_DIR/GenomicsDB/example/java/*.java
  - java TestGenomicsDBImporterWithMergedVCFHeader -L 1:1-100000 -w /tmp/ws -A test0 GenomicsDB/tests/inputs/vcfs/t0.vcf.gz GenomicsDB/tests/inputs/vcfs/t1.vcf.gz GenomicsDB/tests/inputs/vcfs/t2.vcf.gz --vidmap-output /tmp/vid_pb.json --callset-output /tmp/callset_pb.json
  - java TestGenomicsDB --query query.json