From a30b26df5e6382d86f03bf2f9378610bbaffb256 Mon Sep 17 00:00:00 2001
From: Ali Khan <akhanf@users.noreply.github.com>
Date: Fri, 13 Sep 2024 23:58:19 -0400
Subject: [PATCH] chunk size (pre bigstitcher) wasn't set correctly

Needs to be 128x128x128 or 256x256x256 instead of 1x4096x4096. The latter causes memory issues as described in #47
---
 workflow/rules/flatfield_corr.smk | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflow/rules/flatfield_corr.smk b/workflow/rules/flatfield_corr.smk
index cc49069..585c997 100644
--- a/workflow/rules/flatfield_corr.smk
+++ b/workflow/rules/flatfield_corr.smk
@@ -79,7 +79,7 @@ rule apply_basic_flatfield_corr:
             allow_missing=True,
         ),
     params:
-        out_chunks=config["ome_zarr"]["rechunk_size"],
+        out_chunks=(128,128,128)
     output:
         zarr=temp(
             directory(