diff --git a/workflow/rules/ome_zarr.smk b/workflow/rules/ome_zarr.smk index b8febbf..feae8c2 100644 --- a/workflow/rules/ome_zarr.smk +++ b/workflow/rules/ome_zarr.smk @@ -31,7 +31,7 @@ rule zarr_to_ome_zarr: subject="{subject}", datatype="micr", sample="{sample}", - acq="{acq,blaze[a-zA-Z0-9]*}", + acq="{acq,[a-zA-Z0-9]*blaze[a-zA-Z0-9]*}", suffix="SPIM.ome.zarr", ) ) @@ -75,7 +75,7 @@ rule tif_stacks_to_ome_zarr: subject="{subject}", datatype="micr", sample="{sample}", - acq="{acq,prestitched[a-zA-Z0-9]*}", + acq="{acq,[a-zA-Z0-9]*prestitched[a-zA-Z0-9]*}", suffix="SPIM.ome.zarr", ) )