diff --git a/poetry.lock b/poetry.lock
index 238c3ff1..cc032578 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,9 +1,10 @@
-# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand.
 
 [[package]]
 name = "appdirs"
 version = "1.4.4"
 description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -15,6 +16,7 @@ files = [
 name = "arrow"
 version = "1.2.3"
 description = "Better dates & times for Python"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -29,6 +31,7 @@ python-dateutil = ">=2.7.0"
 name = "astor"
 version = "0.8.1"
 description = "Read/rewrite/write Python ASTs"
+category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
 files = [
@@ -40,6 +43,7 @@ files = [
 name = "attrs"
 version = "23.1.0"
 description = "Classes Without Boilerplate"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -56,19 +60,21 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte
 
 [[package]]
 name = "bids-validator"
-version = "1.11.0"
+version = "1.12.0"
 description = "Validator for the Brain Imaging Data Structure"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
-    {file = "bids-validator-1.11.0.tar.gz", hash = "sha256:408c56748b7cf98cf7c31822f33a8d89c5e6e7db5254c345107e8d527576ff53"},
-    {file = "bids_validator-1.11.0-py2.py3-none-any.whl", hash = "sha256:d2fd8943510453eb2f9fed28fba8e063f280a7bbed8152880783631fd4109f1a"},
+    {file = "bids-validator-1.12.0.tar.gz", hash = "sha256:5f9ebd379cdf6d383e983c10539886bf5ea488e4ebf2bc21293125f510893116"},
+    {file = "bids_validator-1.12.0-py2.py3-none-any.whl", hash = "sha256:7936e9f31960cfbfe9af49b33e8d10999d7497d7fcd313d91ea3eda541ae4500"},
 ]
 
 [[package]]
 name = "binaryornot"
 version = "0.4.4"
 description = "Ultra-lightweight pure Python package to check if a file is binary or text."
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -83,6 +89,7 @@ chardet = ">=3.0.2"
 name = "black"
 version = "22.12.0"
 description = "The uncompromising code formatter."
+category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -118,6 +125,7 @@ uvloop = ["uvloop (>=0.15.2)"]
 name = "boutiques"
 version = "0.5.25"
 description = "Schema for describing bash command-line tools"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -140,6 +148,7 @@ termcolor = "*"
 name = "cached-property"
 version = "1.5.2"
 description = "A decorator for caching properties in classes."
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -151,6 +160,7 @@ files = [
 name = "certifi"
 version = "2023.7.22"
 description = "Python package for providing Mozilla's CA Bundle."
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -160,114 +170,118 @@ files = [
 
 [[package]]
 name = "cfgv"
-version = "3.3.1"
+version = "3.4.0"
 description = "Validate configuration and produce human readable error messages."
+category = "dev"
 optional = false
-python-versions = ">=3.6.1"
+python-versions = ">=3.8"
 files = [
-    {file = "cfgv-3.3.1-py2.py3-none-any.whl", hash = "sha256:c6a0883f3917a037485059700b9e75da2464e6c27051014ad85ba6aaa5884426"},
-    {file = "cfgv-3.3.1.tar.gz", hash = "sha256:f5a830efb9ce7a445376bb66ec94c638a9787422f96264c98edc6bdeed8ab736"},
+    {file = "cfgv-3.4.0-py2.py3-none-any.whl", hash = "sha256:b7265b1f29fd3316bfcd2b330d63d024f2bfd8bcb8b0272f8e19a504856c48f9"},
+    {file = "cfgv-3.4.0.tar.gz", hash = "sha256:e52591d4c5f5dead8e0f673fb16db7949d2cfb3f7da4582893288f0ded8fe560"},
 ]
 
 [[package]]
 name = "chardet"
-version = "5.1.0"
+version = "5.2.0"
 description = "Universal encoding detector for Python 3"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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-    {file = "chardet-5.1.0.tar.gz", hash = "sha256:0d62712b956bc154f85fb0a266e2a3c5913c2967e00348701b32411d6def31e5"},
+    {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"},
+    {file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"},
 ]
 
 [[package]]
 name = "charset-normalizer"
-version = "3.1.0"
+version = "3.2.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
+category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
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 ]
 
 [[package]]
 name = "ci-info"
 version = "0.3.0"
 description = "Continuous Integration Information"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -282,13 +296,14 @@ tests = ["pytest"]
 
 [[package]]
 name = "click"
-version = "8.1.3"
+version = "8.1.7"
 description = "Composable command line interface toolkit"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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-    {file = "click-8.1.3.tar.gz", hash = "sha256:7682dc8afb30297001674575ea00d1814d808d6a36af415a82bd481d37ba7b8e"},
+    {file = "click-8.1.7-py3-none-any.whl", hash = "sha256:ae74fb96c20a0277a1d615f1e4d73c8414f5a98db8b799a7931d1582f3390c28"},
+    {file = "click-8.1.7.tar.gz", hash = "sha256:ca9853ad459e787e2192211578cc907e7594e294c7ccc834310722b41b9ca6de"},
 ]
 
 [package.dependencies]
@@ -298,6 +313,7 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 name = "colorama"
 version = "0.4.6"
 description = "Cross-platform colored terminal text."
+category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 files = [
@@ -307,13 +323,14 @@ files = [
 
 [[package]]
 name = "configargparse"
-version = "1.5.3"
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 [package.extras]
@@ -324,6 +341,7 @@ yaml = ["PyYAML"]
 name = "connection-pool"
 version = "0.0.3"
 description = "thread safe connection pool"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
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+    {file = "contourpy-1.1.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl", hash = "sha256:a698c6a7a432789e587168573a864a7ea374c6be8d4f31f9d87c001d5a843493"},
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+    {file = "contourpy-1.1.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl", hash = "sha256:2b836d22bd2c7bb2700348e4521b25e077255ebb6ab68e351ab5aa91ca27e027"},
+    {file = "contourpy-1.1.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:084eaa568400cfaf7179b847ac871582199b1b44d5699198e9602ecbbb5f6104"},
+    {file = "contourpy-1.1.0-pp39-pypy39_pp73-win_amd64.whl", hash = "sha256:911ff4fd53e26b019f898f32db0d4956c9d227d51338fb3b03ec72ff0084ee5f"},
+    {file = "contourpy-1.1.0.tar.gz", hash = "sha256:e53046c3863828d21d531cc3b53786e6580eb1ba02477e8681009b6aa0870b21"},
 ]
 
 [package.dependencies]
 numpy = ">=1.16"
 
 [package.extras]
-bokeh = ["bokeh", "chromedriver", "selenium"]
+bokeh = ["bokeh", "selenium"]
 docs = ["furo", "sphinx-copybutton"]
-mypy = ["contourpy[bokeh]", "docutils-stubs", "mypy (==0.991)", "types-Pillow"]
-test = ["Pillow", "matplotlib", "pytest"]
-test-no-images = ["pytest"]
+mypy = ["contourpy[bokeh,docs]", "docutils-stubs", "mypy (==1.2.0)", "types-Pillow"]
+test = ["Pillow", "contourpy[test-no-images]", "matplotlib"]
+test-no-images = ["pytest", "pytest-cov", "wurlitzer"]
 
 [[package]]
 name = "cookiecutter"
-version = "2.1.1"
+version = "2.3.0"
 description = "A command-line utility that creates projects from project templates, e.g. creating a Python package project from a Python package project template."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "cookiecutter-2.1.1-py2.py3-none-any.whl", hash = "sha256:9f3ab027cec4f70916e28f03470bdb41e637a3ad354b4d65c765d93aad160022"},
-    {file = "cookiecutter-2.1.1.tar.gz", hash = "sha256:f3982be8d9c53dac1261864013fdec7f83afd2e42ede6f6dd069c5e149c540d5"},
+    {file = "cookiecutter-2.3.0-py3-none-any.whl", hash = "sha256:7e87944757c6e9f8729cf89a4139b6a35ab4d6dcbc6ae3e7d6360d44ad3ad383"},
+    {file = "cookiecutter-2.3.0.tar.gz", hash = "sha256:942a794981747f6d7f439d6e49d39dc91a9a641283614160c93c474c72c29621"},
 ]
 
 [package.dependencies]
+arrow = "*"
 binaryornot = ">=0.4.4"
 click = ">=7.0,<9.0.0"
 Jinja2 = ">=2.7,<4.0.0"
-jinja2-time = ">=0.2.0"
 python-slugify = ">=4.0.0"
 pyyaml = ">=5.3.1"
 requests = ">=2.23.0"
+rich = "*"
 
 [[package]]
 name = "cycler"
 version = "0.11.0"
 description = "Composable style cycles"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -439,6 +445,7 @@ files = [
 name = "datrie"
 version = "0.8.2"
 description = "Super-fast, efficiently stored Trie for Python."
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -471,19 +478,21 @@ files = [
 
 [[package]]
 name = "distlib"
-version = "0.3.6"
+version = "0.3.7"
 description = "Distribution utilities"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
-    {file = "distlib-0.3.6-py2.py3-none-any.whl", hash = "sha256:f35c4b692542ca110de7ef0bea44d73981caeb34ca0b9b6b2e6d7790dda8f80e"},
-    {file = "distlib-0.3.6.tar.gz", hash = "sha256:14bad2d9b04d3a36127ac97f30b12a19268f211063d8f8ee4f47108896e11b46"},
+    {file = "distlib-0.3.7-py2.py3-none-any.whl", hash = "sha256:2e24928bc811348f0feb63014e97aaae3037f2cf48712d51ae61df7fd6075057"},
+    {file = "distlib-0.3.7.tar.gz", hash = "sha256:9dafe54b34a028eafd95039d5e5d4851a13734540f1331060d31c9916e7147a8"},
 ]
 
 [[package]]
 name = "distro"
 version = "1.8.0"
 description = "Distro - an OS platform information API"
+category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -495,6 +504,7 @@ files = [
 name = "docopt"
 version = "0.6.2"
 description = "Pythonic argument parser, that will make you smile"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -503,30 +513,33 @@ files = [
 
 [[package]]
 name = "docutils"
-version = "0.20"
+version = "0.20.1"
 description = "Docutils -- Python Documentation Utilities"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "docutils-0.20-py3-none-any.whl", hash = "sha256:a428f10de4de4774389734c986a01b4af2d802d26717108b0f1b9356862937c5"},
-    {file = "docutils-0.20.tar.gz", hash = "sha256:f75a5a52fbcacd81b47e42888ad2b380748aaccfb3f13af0fe69deb759f01eb6"},
+    {file = "docutils-0.20.1-py3-none-any.whl", hash = "sha256:96f387a2c5562db4476f09f13bbab2192e764cac08ebbf3a34a95d9b1e4a59d6"},
+    {file = "docutils-0.20.1.tar.gz", hash = "sha256:f08a4e276c3a1583a86dce3e34aba3fe04d02bba2dd51ed16106244e8a923e3b"},
 ]
 
 [[package]]
 name = "dpath"
-version = "2.1.5"
+version = "2.1.6"
 description = "Filesystem-like pathing and searching for dictionaries"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "dpath-2.1.5-py3-none-any.whl", hash = "sha256:559edcbfc806ca2f9ad9e63566f22e5d41c000e4215bbce9dbf1ca4c859f5e0b"},
-    {file = "dpath-2.1.5.tar.gz", hash = "sha256:ccd964db839baad4aa820612b4b8731b09f40a245d401b723156ce4ef45b22b7"},
+    {file = "dpath-2.1.6-py3-none-any.whl", hash = "sha256:31407395b177ab63ef72e2f6ae268c15e938f2990a8ecf6510f5686c02b6db73"},
+    {file = "dpath-2.1.6.tar.gz", hash = "sha256:f1e07c72e8605c6a9e80b64bc8f42714de08a789c7de417e49c3f87a19692e47"},
 ]
 
 [[package]]
 name = "etelemetry"
 version = "0.3.0"
 description = "Etelemetry python client API"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -544,13 +557,14 @@ tests = ["codecov", "pytest", "pytest-cov"]
 
 [[package]]
 name = "exceptiongroup"
-version = "1.1.1"
+version = "1.1.3"
 description = "Backport of PEP 654 (exception groups)"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "exceptiongroup-1.1.1-py3-none-any.whl", hash = "sha256:232c37c63e4f682982c8b6459f33a8981039e5fb8756b2074364e5055c498c9e"},
-    {file = "exceptiongroup-1.1.1.tar.gz", hash = "sha256:d484c3090ba2889ae2928419117447a14daf3c1231d5e30d0aae34f354f01785"},
+    {file = "exceptiongroup-1.1.3-py3-none-any.whl", hash = "sha256:343280667a4585d195ca1cf9cef84a4e178c4b6cf2274caef9859782b567d5e3"},
+    {file = "exceptiongroup-1.1.3.tar.gz", hash = "sha256:097acd85d473d75af5bb98e41b61ff7fe35efe6675e4f9370ec6ec5126d160e9"},
 ]
 
 [package.extras]
@@ -558,13 +572,14 @@ test = ["pytest (>=6)"]
 
 [[package]]
 name = "fastjsonschema"
-version = "2.16.3"
+version = "2.18.0"
 description = "Fastest Python implementation of JSON schema"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
-    {file = "fastjsonschema-2.16.3-py3-none-any.whl", hash = "sha256:04fbecc94300436f628517b05741b7ea009506ce8f946d40996567c669318490"},
-    {file = "fastjsonschema-2.16.3.tar.gz", hash = "sha256:4a30d6315a68c253cfa8f963b9697246315aa3db89f98b97235e345dedfb0b8e"},
+    {file = "fastjsonschema-2.18.0-py3-none-any.whl", hash = "sha256:128039912a11a807068a7c87d0da36660afbfd7202780db26c4aa7153cfdc799"},
+    {file = "fastjsonschema-2.18.0.tar.gz", hash = "sha256:e820349dd16f806e4bd1467a138dced9def4bc7d6213a34295272a6cac95b5bd"},
 ]
 
 [package.extras]
@@ -572,28 +587,65 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc
 
 [[package]]
 name = "filelock"
-version = "3.12.0"
+version = "3.12.3"
 description = "A platform independent file lock."
+category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "filelock-3.12.0-py3-none-any.whl", hash = "sha256:ad98852315c2ab702aeb628412cbf7e95b7ce8c3bf9565670b4eaecf1db370a9"},
-    {file = "filelock-3.12.0.tar.gz", hash = "sha256:fc03ae43288c013d2ea83c8597001b1129db351aad9c57fe2409327916b8e718"},
+    {file = "filelock-3.12.3-py3-none-any.whl", hash = "sha256:f067e40ccc40f2b48395a80fcbd4728262fab54e232e090a4063ab804179efeb"},
+    {file = "filelock-3.12.3.tar.gz", hash = "sha256:0ecc1dd2ec4672a10c8550a8182f1bd0c0a5088470ecd5a125e45f49472fac3d"},
 ]
 
+[package.dependencies]
+typing-extensions = {version = ">=4.7.1", markers = "python_version < \"3.11\""}
+
 [package.extras]
-docs = ["furo (>=2023.3.27)", "sphinx (>=6.1.3)", "sphinx-autodoc-typehints (>=1.23,!=1.23.4)"]
-testing = ["covdefaults (>=2.3)", "coverage (>=7.2.3)", "diff-cover (>=7.5)", "pytest (>=7.3.1)", "pytest-cov (>=4)", "pytest-mock (>=3.10)", "pytest-timeout (>=2.1)"]
+docs = ["furo (>=2023.7.26)", "sphinx (>=7.1.2)", "sphinx-autodoc-typehints (>=1.24)"]
+testing = ["covdefaults (>=2.3)", "coverage (>=7.3)", "diff-cover (>=7.7)", "pytest (>=7.4)", "pytest-cov (>=4.1)", "pytest-mock (>=3.11.1)", "pytest-timeout (>=2.1)"]
 
 [[package]]
 name = "fonttools"
-version = "4.39.4"
+version = "4.42.1"
 description = "Tools to manipulate font files"
+category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "fonttools-4.39.4-py3-none-any.whl", hash = "sha256:106caf6167c4597556b31a8d9175a3fdc0356fdcd70ab19973c3b0d4c893c461"},
-    {file = "fonttools-4.39.4.zip", hash = "sha256:dba8d7cdb8e2bac1b3da28c5ed5960de09e59a2fe7e63bb73f5a59e57b0430d2"},
+    {file = "fonttools-4.42.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:ed1a13a27f59d1fc1920394a7f596792e9d546c9ca5a044419dca70c37815d7c"},
+    {file = "fonttools-4.42.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:c9b1ce7a45978b821a06d375b83763b27a3a5e8a2e4570b3065abad240a18760"},
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+    {file = "fonttools-4.42.1-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:515607ec756d7865f23070682622c49d922901943697871fc292277cf1e71967"},
+    {file = "fonttools-4.42.1-cp39-cp39-win32.whl", hash = "sha256:0eb79a2da5eb6457a6f8ab904838454accc7d4cccdaff1fd2bd3a0679ea33d64"},
+    {file = "fonttools-4.42.1-cp39-cp39-win_amd64.whl", hash = "sha256:7286aed4ea271df9eab8d7a9b29e507094b51397812f7ce051ecd77915a6e26b"},
+    {file = "fonttools-4.42.1-py3-none-any.whl", hash = "sha256:9398f244e28e0596e2ee6024f808b06060109e33ed38dcc9bded452fd9bbb853"},
+    {file = "fonttools-4.42.1.tar.gz", hash = "sha256:c391cd5af88aacaf41dd7cfb96eeedfad297b5899a39e12f4c2c3706d0a3329d"},
 ]
 
 [package.extras]
@@ -614,6 +666,7 @@ woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"]
 name = "formulaic"
 version = "0.5.2"
 description = "An implementation of Wilkinson formulas."
+category = "main"
 optional = false
 python-versions = ">=3.7.2"
 files = [
@@ -639,6 +692,7 @@ calculus = ["sympy (>=1.3,<1.10)"]
 name = "gitdb"
 version = "4.0.10"
 description = "Git Object Database"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -651,13 +705,14 @@ smmap = ">=3.0.1,<6"
 
 [[package]]
 name = "gitpython"
-version = "3.1.32"
+version = "3.1.35"
 description = "GitPython is a Python library used to interact with Git repositories"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "GitPython-3.1.32-py3-none-any.whl", hash = "sha256:e3d59b1c2c6ebb9dfa7a184daf3b6dd4914237e7488a1730a6d8f6f5d0b4187f"},
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+    {file = "GitPython-3.1.35-py3-none-any.whl", hash = "sha256:c19b4292d7a1d3c0f653858db273ff8a6614100d1eb1528b014ec97286193c09"},
+    {file = "GitPython-3.1.35.tar.gz", hash = "sha256:9cbefbd1789a5fe9bcf621bb34d3f441f3a90c8461d377f84eda73e721d9b06b"},
 ]
 
 [package.dependencies]
@@ -667,6 +722,7 @@ gitdb = ">=4.0.1,<5"
 name = "graphlib-backport"
 version = "1.0.3"
 description = "Backport of the Python 3.9 graphlib module for Python 3.6+"
+category = "main"
 optional = false
 python-versions = ">=3.6,<4.0"
 files = [
@@ -678,6 +734,7 @@ files = [
 name = "greenlet"
 version = "2.0.2"
 description = "Lightweight in-process concurrent programming"
+category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
 files = [
@@ -749,45 +806,43 @@ test = ["objgraph", "psutil"]
 
 [[package]]
 name = "h5py"
-version = "3.8.0"
+version = "3.9.0"
 description = "Read and write HDF5 files from Python"
+category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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-]
-
-[package.dependencies]
-numpy = ">=1.14.5"
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+    {file = "h5py-3.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:95f7a745efd0d56076999b52e8da5fad5d30823bac98b59c68ae75588d09991a"},
+    {file = "h5py-3.9.0-cp39-cp39-win_amd64.whl", hash = "sha256:79bbca34696c6f9eeeb36a91776070c49a060b2879828e2c8fa6c58b8ed10dd1"},
+    {file = "h5py-3.9.0.tar.gz", hash = "sha256:e604db6521c1e367c6bd7fad239c847f53cc46646f2d2651372d05ae5e95f817"},
+]
+
+[package.dependencies]
+numpy = ">=1.17.3"
 
 [[package]]
 name = "humanfriendly"
 version = "10.0"
 description = "Human friendly output for text interfaces using Python"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -800,13 +855,14 @@ pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_ve
 
 [[package]]
 name = "identify"
-version = "2.5.24"
+version = "2.5.27"
 description = "File identification library for Python"
+category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "identify-2.5.24-py2.py3-none-any.whl", hash = "sha256:986dbfb38b1140e763e413e6feb44cd731faf72d1909543178aa79b0e258265d"},
-    {file = "identify-2.5.24.tar.gz", hash = "sha256:0aac67d5b4812498056d28a9a512a483f5085cc28640b02b258a59dac34301d4"},
+    {file = "identify-2.5.27-py2.py3-none-any.whl", hash = "sha256:fdb527b2dfe24602809b2201e033c2a113d7bdf716db3ca8e3243f735dcecaba"},
+    {file = "identify-2.5.27.tar.gz", hash = "sha256:287b75b04a0e22d727bc9a41f0d4f3c1bcada97490fa6eabb5b28f0e9097e733"},
 ]
 
 [package.extras]
@@ -816,6 +872,7 @@ license = ["ukkonen"]
 name = "idna"
 version = "3.4"
 description = "Internationalized Domain Names in Applications (IDNA)"
+category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -825,13 +882,14 @@ files = [
 
 [[package]]
 name = "imageio"
-version = "2.28.1"
+version = "2.31.3"
 description = "Library for reading and writing a wide range of image, video, scientific, and volumetric data formats."
+category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "imageio-2.28.1-py3-none-any.whl", hash = "sha256:b9b456146aab459e648cde633b81bf487eb45248948f79c033e55af3bf1e6d70"},
-    {file = "imageio-2.28.1.tar.gz", hash = "sha256:5db5087be5c814ecf7e2c7d30a1a15c97eca97d8c26f31ddc54d767d4a43bce8"},
+    {file = "imageio-2.31.3-py3-none-any.whl", hash = "sha256:ea777be55bfa4bd6aee126c7dfa3bf1759bf87be982876c50f1a976d1b65446d"},
+    {file = "imageio-2.31.3.tar.gz", hash = "sha256:74c6a832d81b7ad5a8a80976dea58ee033d3e2b99a54990cbd789b4cb0b31461"},
 ]
 
 [package.dependencies]
@@ -858,6 +916,7 @@ tifffile = ["tifffile"]
 name = "importlib-metadata"
 version = "1.7.0"
 description = "Read metadata from Python packages"
+category = "dev"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 files = [
@@ -874,26 +933,28 @@ testing = ["importlib-resources (>=1.3)", "packaging", "pep517"]
 
 [[package]]
 name = "importlib-resources"
-version = "5.12.0"
+version = "5.13.0"
 description = "Read resources from Python packages"
+category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "importlib_resources-5.12.0-py3-none-any.whl", hash = "sha256:7b1deeebbf351c7578e09bf2f63fa2ce8b5ffec296e0d349139d43cca061a81a"},
-    {file = "importlib_resources-5.12.0.tar.gz", hash = "sha256:4be82589bf5c1d7999aedf2a45159d10cb3ca4f19b2271f8792bc8e6da7b22f6"},
+    {file = "importlib_resources-5.13.0-py3-none-any.whl", hash = "sha256:9f7bd0c97b79972a6cce36a366356d16d5e13b09679c11a58f1014bfdf8e64b2"},
+    {file = "importlib_resources-5.13.0.tar.gz", hash = "sha256:82d5c6cca930697dbbd86c93333bb2c2e72861d4789a11c2662b933e5ad2b528"},
 ]
 
 [package.dependencies]
 zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [[package]]
 name = "iniconfig"
 version = "2.0.0"
 description = "brain-dead simple config-ini parsing"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -905,6 +966,7 @@ files = [
 name = "interface-meta"
 version = "1.3.0"
 description = "`interface_meta` provides a convenient way to expose an extensible API with enforced method signatures and consistent documentation."
+category = "main"
 optional = false
 python-versions = ">=3.7,<4.0"
 files = [
@@ -916,6 +978,7 @@ files = [
 name = "isodate"
 version = "0.6.1"
 description = "An ISO 8601 date/time/duration parser and formatter"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -930,6 +993,7 @@ six = "*"
 name = "isort"
 version = "5.12.0"
 description = "A Python utility / library to sort Python imports."
+category = "dev"
 optional = false
 python-versions = ">=3.8.0"
 files = [
@@ -947,6 +1011,7 @@ requirements-deprecated-finder = ["pip-api", "pipreqs"]
 name = "jinja2"
 version = "3.1.2"
 description = "A very fast and expressive template engine."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -960,62 +1025,68 @@ MarkupSafe = ">=2.0"
 [package.extras]
 i18n = ["Babel (>=2.7)"]
 
-[[package]]
-name = "jinja2-time"
-version = "0.2.0"
-description = "Jinja2 Extension for Dates and Times"
-optional = false
-python-versions = "*"
-files = [
-    {file = "jinja2-time-0.2.0.tar.gz", hash = "sha256:d14eaa4d315e7688daa4969f616f226614350c48730bfa1692d2caebd8c90d40"},
-    {file = "jinja2_time-0.2.0-py2.py3-none-any.whl", hash = "sha256:d3eab6605e3ec8b7a0863df09cc1d23714908fa61aa6986a845c20ba488b4efa"},
-]
-
-[package.dependencies]
-arrow = "*"
-jinja2 = "*"
-
 [[package]]
 name = "joblib"
-version = "1.2.0"
+version = "1.3.2"
 description = "Lightweight pipelining with Python functions"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "joblib-1.2.0-py3-none-any.whl", hash = "sha256:091138ed78f800342968c523bdde947e7a305b8594b910a0fea2ab83c3c6d385"},
-    {file = "joblib-1.2.0.tar.gz", hash = "sha256:e1cee4a79e4af22881164f218d4311f60074197fb707e082e803b61f6d137018"},
+    {file = "joblib-1.3.2-py3-none-any.whl", hash = "sha256:ef4331c65f239985f3f2220ecc87db222f08fd22097a3dd5698f693875f8cbb9"},
+    {file = "joblib-1.3.2.tar.gz", hash = "sha256:92f865e621e17784e7955080b6d042489e3b8e294949cc44c6eac304f59772b1"},
 ]
 
 [[package]]
 name = "jsonschema"
-version = "4.17.3"
+version = "4.19.0"
 description = "An implementation of JSON Schema validation for Python"
+category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "jsonschema-4.17.3-py3-none-any.whl", hash = "sha256:a870ad254da1a8ca84b6a2905cac29d265f805acc57af304784962a2aa6508f6"},
-    {file = "jsonschema-4.17.3.tar.gz", hash = "sha256:0f864437ab8b6076ba6707453ef8f98a6a0d512a80e93f8abdb676f737ecb60d"},
+    {file = "jsonschema-4.19.0-py3-none-any.whl", hash = "sha256:043dc26a3845ff09d20e4420d6012a9c91c9aa8999fa184e7efcfeccb41e32cb"},
+    {file = "jsonschema-4.19.0.tar.gz", hash = "sha256:6e1e7569ac13be8139b2dd2c21a55d350066ee3f80df06c608b398cdc6f30e8f"},
 ]
 
 [package.dependencies]
-attrs = ">=17.4.0"
+attrs = ">=22.2.0"
 importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
+jsonschema-specifications = ">=2023.03.6"
 pkgutil-resolve-name = {version = ">=1.3.10", markers = "python_version < \"3.9\""}
-pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2"
+referencing = ">=0.28.4"
+rpds-py = ">=0.7.1"
 
 [package.extras]
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-version = "0.4.4"
+version = "0.4.5"
 description = "Snakebids app for merging multiple label maps."
+category = "main"
 optional = false
 python-versions = ">=3.8,<3.11"
 files = []
@@ -1116,137 +1225,156 @@ develop = false
 [package.dependencies]
 nibabel = "^3.2.2"
 numpy = "^1.22.3"
-snakebids = "^0.8.0"
+snakebids = "^0.9.0"
 xarray = "^2022.11.0"
 
 [package.source]
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-test = ["pytest (>=7.2)", "pytest-cov (>=4.0)"]
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+test = ["pytest (>=7.4)", "pytest-cov (>=4.1)"]
 
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+version = "1.3.0"
 description = "Version numbering for anarchists and software realists"
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 [package.extras]
 cssselect = ["cssselect (>=0.7)"]
 html5 = ["html5lib"]
 htmlsoup = ["BeautifulSoup4"]
-source = ["Cython (>=0.29.7)"]
+source = ["Cython (>=0.29.35)"]
 
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 version = "1.4.0"
 description = "Maison"
+category = "dev"
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 python-versions = ">=3.6.1,<4.0.0"
 files = [
@@ -1259,113 +1387,140 @@ click = ">=8.0.1,<9.0.0"
 pydantic = ">=1.8.2,<2.0.0"
 toml = ">=0.10.2,<0.11.0"
 
+[[package]]
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+
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+
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+plugins = ["mdit-py-plugins"]
+profiling = ["gprof2dot"]
+rtd = ["jupyter_sphinx", "mdit-py-plugins", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx_book_theme"]
+testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
+
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 ]
 
 [package.dependencies]
@@ -1377,18 +1532,31 @@ kiwisolver = ">=1.0.1"
 numpy = ">=1.20"
 packaging = ">=20.0"
 pillow = ">=6.2.0"
-pyparsing = ">=2.3.1"
+pyparsing = ">=2.3.1,<3.1"
 python-dateutil = ">=2.7"
 
+[[package]]
+name = "mdurl"
+version = "0.1.2"
+description = "Markdown URL utilities"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "mdurl-0.1.2-py3-none-any.whl", hash = "sha256:84008a41e51615a49fc9966191ff91509e3c40b939176e643fd50a5c2196b8f8"},
+    {file = "mdurl-0.1.2.tar.gz", hash = "sha256:bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba"},
+]
+
 [[package]]
 name = "mock"
-version = "5.0.2"
+version = "5.1.0"
 description = "Rolling backport of unittest.mock for all Pythons"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "mock-5.0.2-py3-none-any.whl", hash = "sha256:0e0bc5ba78b8db3667ad636d964eb963dc97a59f04c6f6214c5f0e4a8f726c56"},
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+    {file = "mock-5.1.0-py3-none-any.whl", hash = "sha256:18c694e5ae8a208cdb3d2c20a993ca1a7b0efa258c247a1e565150f477f83744"},
+    {file = "mock-5.1.0.tar.gz", hash = "sha256:5e96aad5ccda4718e0a229ed94b2024df75cc2d55575ba5762d31f5767b8767d"},
 ]
 
 [package.extras]
@@ -1400,6 +1568,7 @@ test = ["pytest", "pytest-cov"]
 name = "more-itertools"
 version = "9.1.0"
 description = "More routines for operating on iterables, beyond itertools"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1411,6 +1580,7 @@ files = [
 name = "mypy-extensions"
 version = "1.0.0"
 description = "Type system extensions for programs checked with the mypy type checker."
+category = "dev"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -1420,13 +1590,14 @@ files = [
 
 [[package]]
 name = "nbformat"
-version = "5.8.0"
+version = "5.9.2"
 description = "The Jupyter Notebook format"
+category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -1443,6 +1614,7 @@ test = ["pep440", "pre-commit", "pytest", "testpath"]
 name = "networkx"
 version = "3.1"
 description = "Python package for creating and manipulating graphs and networks"
+category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1461,6 +1633,7 @@ test = ["codecov (>=2.1)", "pytest (>=7.2)", "pytest-cov (>=4.0)"]
 name = "nexus-sdk"
 version = "0.3.2"
 description = "Python SDK for Blue Brain Nexus v1."
+category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -1481,6 +1654,7 @@ test = ["pytest", "pytest-cov"]
 name = "nibabel"
 version = "3.2.2"
 description = "Access a multitude of neuroimaging data formats"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1508,6 +1682,7 @@ test = ["coverage", "pytest (!=5.3.4)", "pytest (<7)", "pytest-cov", "pytest-doc
 name = "nilearn"
 version = "0.10.1"
 description = "Statistical learning for neuroimaging in Python"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1538,6 +1713,7 @@ test = ["coverage", "pytest (>=6.0.0)", "pytest-cov"]
 name = "nipype"
 version = "1.8.6"
 description = "Neuroimaging in Python: Pipelines and Interfaces"
+category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
@@ -1579,13 +1755,14 @@ xvfbwrapper = ["xvfbwrapper"]
 
 [[package]]
 name = "nitransforms"
-version = "22.0.0"
+version = "23.0.1"
 description = "NiTransforms -- Neuroimaging spatial transforms in Python."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -1603,16 +1780,19 @@ tests = ["codecov", "pytest", "pytest-cov"]
 
 [[package]]
 name = "niworkflows"
-version = "1.7.9"
+version = "1.8.1"
 description = "NeuroImaging Workflows provides processing tools for magnetic resonance images of the brain."
+category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
 attrs = "*"
+importlib-resources = {version = "*", markers = "python_version < \"3.9\""}
 jinja2 = "*"
 looseversion = "*"
 matplotlib = ">=3.4.2"
@@ -1624,7 +1804,7 @@ numpy = "*"
 packaging = "*"
 pandas = "*"
 pybids = ">=0.15.1"
-PyYAML = "*"
+pyyaml = "*"
 scikit-image = "*"
 scipy = "*"
 seaborn = "*"
@@ -1634,9 +1814,9 @@ traits = "<6.4"
 transforms3d = "*"
 
 [package.extras]
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+all = ["niworkflows[doc,pointclouds,style,tests]"]
 doc = ["furo (>=2021.10.09,<2021.11.0)", "pydot (>=1.2.3)", "pydotplus", "sphinx (>=4.0,<5.0)", "sphinxcontrib-apidoc", "sphinxcontrib-napoleon"]
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+docs = ["niworkflows[doc]"]
 pointclouds = ["pyntcloud"]
 style = ["flake8 (>=3.7.0)"]
 tests = ["coverage (>=5.2.1)", "pytest (>=4.4)", "pytest-cov", "pytest-env", "pytest-xdist (>=1.28)", "pytest-xvfb"]
@@ -1645,6 +1825,7 @@ tests = ["coverage (>=5.2.1)", "pytest (>=4.4)", "pytest-cov", "pytest-env", "py
 name = "nodeenv"
 version = "1.8.0"
 description = "Node.js virtual environment builder"
+category = "dev"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*"
 files = [
@@ -1659,6 +1840,7 @@ setuptools = "*"
 name = "num2words"
 version = "0.5.12"
 description = "Modules to convert numbers to words. Easily extensible."
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1671,45 +1853,47 @@ docopt = ">=0.6.2"
 
 [[package]]
 name = "numpy"
-version = "1.24.3"
+version = "1.24.4"
 description = "Fundamental package for array computing in Python"
+category = "main"
 optional = false
 python-versions = ">=3.8"
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 xml = ["lxml (>=4.6.3)"]
 
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 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
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 [package.extras]
@@ -1888,6 +2066,7 @@ tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "pa
 name = "pkgutil-resolve-name"
 version = "1.3.10"
 description = "Resolve a name to an object."
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1899,6 +2078,7 @@ files = [
 name = "plac"
 version = "1.3.5"
 description = "The smartest command line arguments parser in the world"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1908,28 +2088,30 @@ files = [
 
 [[package]]
 name = "platformdirs"
-version = "3.5.1"
+version = "3.10.0"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 [package.extras]
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-test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.3.1)", "pytest-cov (>=4)", "pytest-mock (>=3.10)"]
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 [[package]]
 name = "pluggy"
-version = "1.0.0"
+version = "1.3.0"
 description = "plugin and hook calling mechanisms for python"
+category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
@@ -1940,6 +2122,7 @@ testing = ["pytest", "pytest-benchmark"]
 name = "poethepoet"
 version = "0.13.1"
 description = "A task runner that works well with poetry."
+category = "dev"
 optional = false
 python-versions = ">=3.6.2"
 files = [
@@ -1958,6 +2141,7 @@ poetry-plugin = ["poetry (>=1.0,<2.0)"]
 name = "pre-commit"
 version = "2.21.0"
 description = "A framework for managing and maintaining multi-language pre-commit hooks."
+category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1976,6 +2160,7 @@ virtualenv = ">=20.10.0"
 name = "prov"
 version = "2.0.0"
 description = "A library for W3C Provenance Data Model supporting PROV-JSON, PROV-XML and PROV-O (RDF)"
+category = "main"
 optional = false
 python-versions = ">=3.6, <4"
 files = [
@@ -1996,6 +2181,7 @@ dot = ["pydot (>=1.2.0)"]
 name = "psutil"
 version = "5.9.5"
 description = "Cross-platform lib for process and system monitoring in Python."
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -2022,6 +2208,7 @@ test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]
 name = "pulp"
 version = "2.7.0"
 description = "PuLP is an LP modeler written in python. PuLP can generate MPS or LP files and call GLPK, COIN CLP/CBC, CPLEX, and GUROBI to solve linear problems."
+category = "main"
 optional = false
 python-versions = "*"
 files = [
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 name = "puremagic"
 version = "1.15"
 description = "Pure python implementation of magic file detection"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2044,6 +2232,7 @@ files = [
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 version = "0.0.3"
 description = "Wrapper to manage deprecations"
+category = "main"
 optional = false
 python-versions = ">=3.7,<3.12"
 files = [
@@ -2057,13 +2246,14 @@ typing-extensions = ">=3.10.0"
 
 [[package]]
 name = "pybids"
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+version = "0.16.3"
 description = "bids: interface with datasets conforming to BIDS"
+category = "main"
 optional = false
 python-versions = ">=3.8"
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 [package.dependencies]
@@ -2090,47 +2280,48 @@ tutorial = ["ipykernel", "jinja2", "jupyter-client", "markupsafe", "nbconvert"]
 
 [[package]]
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@@ -2144,6 +2335,7 @@ email = ["email-validator (>=1.0.3)"]
 name = "pydot"
 version = "1.4.2"
 description = "Python interface to Graphviz's Dot"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -2156,13 +2348,14 @@ pyparsing = ">=2.1.4"
 
 [[package]]
 name = "pygments"
-version = "2.15.1"
+version = "2.16.1"
 description = "Pygments is a syntax highlighting package written in Python."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.extras]
@@ -2172,6 +2365,7 @@ plugins = ["importlib-metadata"]
 name = "pyparsing"
 version = "3.0.9"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
+category = "main"
 optional = false
 python-versions = ">=3.6.8"
 files = [
@@ -2186,6 +2380,7 @@ diagrams = ["jinja2", "railroad-diagrams"]
 name = "pyreadline3"
 version = "3.4.1"
 description = "A python implementation of GNU readline."
+category = "main"
 optional = false
 python-versions = "*"
 files = [
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-
 [[package]]
 name = "pytest"
-version = "7.3.1"
+version = "7.4.2"
 description = "pytest: simple powerful testing with Python"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -2249,12 +2409,13 @@ pluggy = ">=0.12,<2.0"
 tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
 
 [package.extras]
-testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"]
+testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
 
 [[package]]
 name = "pytest-console-scripts"
 version = "1.2.0"
 description = "Pytest plugin for testing console scripts"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -2269,6 +2430,7 @@ pytest = ">=4.0.0"
 name = "python-dateutil"
 version = "2.8.2"
 description = "Extensions to the standard Python datetime module"
+category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
 files = [
@@ -2283,6 +2445,7 @@ six = ">=1.5"
 name = "python-slugify"
 version = "8.0.1"
 description = "A Python slugify application that also handles Unicode"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2298,19 +2461,21 @@ unidecode = ["Unidecode (>=1.1.1)"]
 
 [[package]]
 name = "pytz"
-version = "2023.3"
+version = "2023.3.post1"
 description = "World timezone definitions, modern and historical"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
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+    {file = "pytz-2023.3.post1.tar.gz", hash = "sha256:7b4fddbeb94a1eba4b557da24f19fdf9db575192544270a9101d8509f9f43d7b"},
 ]
 
 [[package]]
 name = "pywavelets"
 version = "1.4.1"
 description = "PyWavelets, wavelet transform module"
+category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2348,6 +2513,7 @@ numpy = ">=1.17.3"
 name = "pywin32"
 version = "306"
 description = "Python for Window Extensions"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2369,57 +2535,59 @@ files = [
 
 [[package]]
 name = "pyyaml"
-version = "6.0"
+version = "6.0.1"
 description = "YAML parser and emitter for Python"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
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 [[package]]
 name = "rdflib"
 version = "6.3.2"
 description = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information."
+category = "main"
 optional = false
 python-versions = ">=3.7,<4.0"
 files = [
@@ -2437,15 +2605,32 @@ html = ["html5lib (>=1.0,<2.0)"]
 lxml = ["lxml (>=4.3.0,<5.0.0)"]
 networkx = ["networkx (>=2.0.0,<3.0.0)"]
 
+[[package]]
+name = "referencing"
+version = "0.30.2"
+description = "JSON Referencing + Python"
+category = "main"
+optional = false
+python-versions = ">=3.8"
+files = [
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+]
+
+[package.dependencies]
+attrs = ">=22.2.0"
+rpds-py = ">=0.7.0"
+
 [[package]]
 name = "requests"
-version = "2.30.0"
+version = "2.31.0"
 description = "Python HTTP for Humans."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -2462,6 +2647,7 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 name = "reretry"
 version = "0.11.8"
 description = "An easy to use, but functional decorator for retrying on exceptions."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2469,10 +2655,138 @@ files = [
     {file = "reretry-0.11.8.tar.gz", hash = "sha256:f2791fcebe512ea2f1d153a2874778523a8064860b591cd90afc21a8bed432e3"},
 ]
 
+[[package]]
+name = "rich"
+version = "13.5.2"
+description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
+category = "main"
+optional = false
+python-versions = ">=3.7.0"
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+]
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 ]
 
 [package.dependencies]
 joblib = ">=1.1.1"
 numpy = ">=1.17.3"
-scipy = ">=1.3.2"
+scipy = ">=1.5.0"
 threadpoolctl = ">=2.0.0"
 
 [package.extras]
 benchmark = ["matplotlib (>=3.1.3)", "memory-profiler (>=0.57.0)", "pandas (>=1.0.5)"]
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+examples = ["matplotlib (>=3.1.3)", "pandas (>=1.0.5)", "plotly (>=5.14.0)", "pooch (>=1.6.0)", "scikit-image (>=0.16.2)", "seaborn (>=0.9.0)"]
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 [[package]]
 name = "scipy"
 version = "1.10.1"
 description = "Fundamental algorithms for scientific computing in Python"
+category = "main"
 optional = false
 python-versions = "<3.12,>=3.8"
 files = [
@@ -2698,6 +2965,7 @@ test = ["asv", "gmpy2", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeo
 name = "seaborn"
 version = "0.12.2"
 description = "Statistical data visualization"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2717,24 +2985,26 @@ stats = ["scipy (>=1.3)", "statsmodels (>=0.10)"]
 
 [[package]]
 name = "setuptools"
-version = "67.7.2"
+version = "68.2.0"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
+category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
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+testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
 
 [[package]]
 name = "simplejson"
 version = "3.19.1"
 description = "Simple, fast, extensible JSON encoder/decoder for Python"
+category = "main"
 optional = false
 python-versions = ">=2.5, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -2829,6 +3099,7 @@ files = [
 name = "six"
 version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -2838,13 +3109,14 @@ files = [
 
 [[package]]
 name = "smart-open"
-version = "6.3.0"
+version = "6.4.0"
 description = "Utils for streaming large files (S3, HDFS, GCS, Azure Blob Storage, gzip, bz2...)"
+category = "main"
 optional = false
 python-versions = ">=3.6,<4.0"
 files = [
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-    {file = "smart_open-6.3.0.tar.gz", hash = "sha256:d5238825fe9a9340645fac3d75b287c08fbb99fb2b422477de781c9f5f09e019"},
+    {file = "smart_open-6.4.0-py3-none-any.whl", hash = "sha256:8d3ef7e6997e8e42dd55c74166ed21e6ac70664caa32dd940b26d54a8f6b4142"},
+    {file = "smart_open-6.4.0.tar.gz", hash = "sha256:be3c92c246fbe80ebce8fbacb180494a481a77fcdcb7c1aadb2ea5b9c2bee8b9"},
 ]
 
 [package.extras]
@@ -2861,6 +3133,7 @@ webhdfs = ["requests"]
 name = "smmap"
 version = "5.0.0"
 description = "A pure Python implementation of a sliding window memory map manager"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2870,13 +3143,14 @@ files = [
 
 [[package]]
 name = "snakebids"
-version = "0.8.1"
+version = "0.9.2"
 description = "BIDS integration into snakemake workflows"
+category = "main"
 optional = false
 python-versions = ">=3.7,<3.12"
 files = [
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 ]
 
 [package.dependencies]
@@ -2884,12 +3158,14 @@ attrs = ">=21.2.0,<24"
 boutiques = ">=0.5.25,<0.6.0"
 cached-property = ">=1.5.2,<2.0.0"
 cookiecutter = ">=2.1.1,<3.0.0"
+importlib-resources = ">=5.12.0,<6.0.0"
 more-itertools = ">=8,<10"
 numpy = {version = ">=1.21.2", markers = "python_version == \"3.10\""}
 pandas = {version = ">=1.3", markers = "python_full_version >= \"3.7.1\""}
 pvandyken-deprecated = "0.0.3"
 pybids = {version = ">=0.16.0,<0.17.0", markers = "python_version >= \"3.8\""}
 PyYAML = ">=6,<7"
+scipy = {version = ">=1.9.2", markers = "python_version >= \"3.8\""}
 snakemake = {version = ">=5.28.0", markers = "python_version >= \"3.7\""}
 typing-extensions = ">=3.10.0"
 
@@ -2897,6 +3173,7 @@ typing-extensions = ">=3.10.0"
 name = "snakefmt"
 version = "0.6.1"
 description = "The uncompromising Snakemake code formatter"
+category = "dev"
 optional = false
 python-versions = ">=3.7.0,<4.0.0"
 files = [
@@ -2912,19 +3189,19 @@ toml = ">=0.10.2,<0.11.0"
 
 [[package]]
 name = "snakemake"
-version = "7.25.4"
+version = "7.32.3"
 description = "Workflow management system to create reproducible and scalable data analyses"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
 appdirs = "*"
 configargparse = "*"
-connection-pool = ">=0.0.3"
+connection_pool = ">=0.0.3"
 datrie = "*"
 docutils = "*"
 gitpython = "*"
@@ -2932,20 +3209,22 @@ humanfriendly = "*"
 jinja2 = ">=3.0,<4.0"
 jsonschema = "*"
 nbformat = "*"
+packaging = "*"
 psutil = "*"
 pulp = ">=2.0"
 pyyaml = "*"
 requests = "*"
 reretry = "*"
-smart-open = ">=3.0"
+smart_open = ">=3.0"
 stopit = "*"
 tabulate = "*"
 throttler = "*"
 toposort = ">=1.10"
 wrapt = "*"
-yte = ">=1.0,<2.0"
+yte = ">=1.5.1,<2.0"
 
 [package.extras]
+azure = ["azure-batch", "azure-core", "azure-identity", "azure-mgmt-batch", "azure-storage-blob"]
 google-cloud = ["google-api-python-client", "google-cloud-storage", "google-crc32c", "oauth2client"]
 messaging = ["slacker"]
 pep = ["eido", "peppy"]
@@ -2953,52 +3232,53 @@ reports = ["pygments"]
 
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 name = "sqlalchemy"
-version = "2.0.13"
+version = "2.0.20"
 description = "Database Abstraction Library"
+category = "main"
 optional = false
 python-versions = ">=3.7"
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+    {file = "SQLAlchemy-2.0.20-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:eefebcc5c555803065128401a1e224a64607259b5eb907021bf9b175f315d2a6"},
+    {file = "SQLAlchemy-2.0.20-cp39-cp39-win32.whl", hash = "sha256:3423dc2a3b94125094897118b52bdf4d37daf142cbcf26d48af284b763ab90e9"},
+    {file = "SQLAlchemy-2.0.20-cp39-cp39-win_amd64.whl", hash = "sha256:5ed61e3463021763b853628aef8bc5d469fe12d95f82c74ef605049d810f3267"},
+    {file = "SQLAlchemy-2.0.20-py3-none-any.whl", hash = "sha256:63a368231c53c93e2b67d0c5556a9836fdcd383f7e3026a39602aad775b14acf"},
+    {file = "SQLAlchemy-2.0.20.tar.gz", hash = "sha256:ca8a5ff2aa7f3ade6c498aaafce25b1eaeabe4e42b73e25519183e4566a16fc6"},
 ]
 
 [package.dependencies]
@@ -3006,7 +3286,7 @@ greenlet = {version = "!=0.4.17", markers = "platform_machine == \"aarch64\" or
 typing-extensions = ">=4.2.0"
 
 [package.extras]
-aiomysql = ["aiomysql", "greenlet (!=0.4.17)"]
+aiomysql = ["aiomysql (>=0.2.0)", "greenlet (!=0.4.17)"]
 aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing-extensions (!=3.10.0.1)"]
 asyncio = ["greenlet (!=0.4.17)"]
 asyncmy = ["asyncmy (>=0.2.3,!=0.2.4,!=0.2.6)", "greenlet (!=0.4.17)"]
@@ -3025,6 +3305,7 @@ postgresql-pg8000 = ["pg8000 (>=1.29.1)"]
 postgresql-psycopg = ["psycopg (>=3.0.7)"]
 postgresql-psycopg2binary = ["psycopg2-binary"]
 postgresql-psycopg2cffi = ["psycopg2cffi"]
+postgresql-psycopgbinary = ["psycopg[binary] (>=3.0.7)"]
 pymysql = ["pymysql"]
 sqlcipher = ["sqlcipher3-binary"]
 
@@ -3032,6 +3313,7 @@ sqlcipher = ["sqlcipher3-binary"]
 name = "sseclient"
 version = "0.0.27"
 description = "Python client library for reading Server Sent Event streams."
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3046,6 +3328,7 @@ six = "*"
 name = "stopit"
 version = "1.1.2"
 description = "Timeout control decorator and context managers, raise any exception in another thread"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3056,6 +3339,7 @@ files = [
 name = "svgutils"
 version = "0.3.4"
 description = "Python SVG editor"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3070,6 +3354,7 @@ lxml = "*"
 name = "tabulate"
 version = "0.9.0"
 description = "Pretty-print tabular data"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3084,6 +3369,7 @@ widechars = ["wcwidth"]
 name = "templateflow"
 version = "23.0.0"
 description = "TemplateFlow Python Client - TemplateFlow is the Zone of neuroimaging templates."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3108,6 +3394,7 @@ tests = ["coverage", "pytest", "pytest-cov (==2.5.1)", "pytest-xdist"]
 name = "termcolor"
 version = "2.3.0"
 description = "ANSI color formatting for output in terminal"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3122,6 +3409,7 @@ tests = ["pytest", "pytest-cov"]
 name = "text-unidecode"
 version = "1.3"
 description = "The most basic Text::Unidecode port"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3131,19 +3419,21 @@ files = [
 
 [[package]]
 name = "threadpoolctl"
-version = "3.1.0"
+version = "3.2.0"
 description = "threadpoolctl"
+category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 files = [
-    {file = "threadpoolctl-3.1.0-py3-none-any.whl", hash = "sha256:8b99adda265feb6773280df41eece7b2e6561b772d21ffd52e372f999024907b"},
-    {file = "threadpoolctl-3.1.0.tar.gz", hash = "sha256:a335baacfaa4400ae1f0d8e3a58d6674d2f8828e3716bb2802c44955ad391380"},
+    {file = "threadpoolctl-3.2.0-py3-none-any.whl", hash = "sha256:2b7818516e423bdaebb97c723f86a7c6b0a83d3f3b0970328d66f4d9104dc032"},
+    {file = "threadpoolctl-3.2.0.tar.gz", hash = "sha256:c96a0ba3bdddeaca37dc4cc7344aafad41cdb8c313f74fdfe387a867bba93355"},
 ]
 
 [[package]]
 name = "throttler"
 version = "1.2.2"
 description = "Zero-dependency Python package for easy throttling with asyncio support"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3156,13 +3446,14 @@ dev = ["aiohttp (>=3.8)", "codecov (>=2.1)", "flake8 (>=4.0)", "pytest (>=7.0)",
 
 [[package]]
 name = "tifffile"
-version = "2023.4.12"
+version = "2023.7.10"
 description = "Read and write TIFF files"
+category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "tifffile-2023.4.12-py3-none-any.whl", hash = "sha256:3161954746fe32c4f4244d0fb2eb0a272f3a3760b78882a42faa83ac5e6e0b74"},
-    {file = "tifffile-2023.4.12.tar.gz", hash = "sha256:2fa99f9890caab919d932a0acaa9d0f5843dc2ef3594e212963932e20713badd"},
+    {file = "tifffile-2023.7.10-py3-none-any.whl", hash = "sha256:94dfdec321ace96abbfe872a66cfd824800c099a2db558443453eebc2c11b304"},
+    {file = "tifffile-2023.7.10.tar.gz", hash = "sha256:c06ec460926d16796eeee249a560bcdddf243daae36ac62af3c84a953cd60b4a"},
 ]
 
 [package.dependencies]
@@ -3175,6 +3466,7 @@ all = ["defusedxml", "fsspec", "imagecodecs (>=2023.1.23)", "lxml", "matplotlib"
 name = "toml"
 version = "0.10.2"
 description = "Python Library for Tom's Obvious, Minimal Language"
+category = "dev"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -3186,6 +3478,7 @@ files = [
 name = "tomli"
 version = "2.0.1"
 description = "A lil' TOML parser"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3197,6 +3490,7 @@ files = [
 name = "toposort"
 version = "1.10"
 description = "Implements a topological sort algorithm."
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3206,20 +3500,21 @@ files = [
 
 [[package]]
 name = "tqdm"
-version = "4.65.0"
+version = "4.66.1"
 description = "Fast, Extensible Progress Meter"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "tqdm-4.65.0-py3-none-any.whl", hash = "sha256:c4f53a17fe37e132815abceec022631be8ffe1b9381c2e6e30aa70edc99e9671"},
-    {file = "tqdm-4.65.0.tar.gz", hash = "sha256:1871fb68a86b8fb3b59ca4cdd3dcccbc7e6d613eeed31f4c332531977b89beb5"},
+    {file = "tqdm-4.66.1-py3-none-any.whl", hash = "sha256:d302b3c5b53d47bce91fea46679d9c3c6508cf6332229aa1e7d8653723793386"},
+    {file = "tqdm-4.66.1.tar.gz", hash = "sha256:d88e651f9db8d8551a62556d3cff9e3034274ca5d66e93197cf2490e2dcb69c7"},
 ]
 
 [package.dependencies]
 colorama = {version = "*", markers = "platform_system == \"Windows\""}
 
 [package.extras]
-dev = ["py-make (>=0.1.0)", "twine", "wheel"]
+dev = ["pytest (>=6)", "pytest-cov", "pytest-timeout", "pytest-xdist"]
 notebook = ["ipywidgets (>=6)"]
 slack = ["slack-sdk"]
 telegram = ["requests"]
@@ -3228,6 +3523,7 @@ telegram = ["requests"]
 name = "traitlets"
 version = "5.9.0"
 description = "Traitlets Python configuration system"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3243,6 +3539,7 @@ test = ["argcomplete (>=2.0)", "pre-commit", "pytest", "pytest-mock"]
 name = "traits"
 version = "6.3.2"
 description = "Observable typed attributes for Python classes"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -3291,6 +3588,7 @@ test = ["Cython", "PySide2", "Sphinx (>=2.1.0,!=3.2.0)", "flake8", "flake8-ets",
 name = "transforms3d"
 version = "0.4.1"
 description = "Functions for 3D coordinate transformations"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -3299,19 +3597,21 @@ files = [
 
 [[package]]
 name = "typing-extensions"
-version = "4.5.0"
+version = "4.7.1"
 description = "Backported and Experimental Type Hints for Python 3.7+"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "typing_extensions-4.5.0-py3-none-any.whl", hash = "sha256:fb33085c39dd998ac16d1431ebc293a8b3eedd00fd4a32de0ff79002c19511b4"},
-    {file = "typing_extensions-4.5.0.tar.gz", hash = "sha256:5cb5f4a79139d699607b3ef622a1dedafa84e115ab0024e0d9c044a9479ca7cb"},
+    {file = "typing_extensions-4.7.1-py3-none-any.whl", hash = "sha256:440d5dd3af93b060174bf433bccd69b0babc3b15b1a8dca43789fd7f61514b36"},
+    {file = "typing_extensions-4.7.1.tar.gz", hash = "sha256:b75ddc264f0ba5615db7ba217daeb99701ad295353c45f9e95963337ceeeffb2"},
 ]
 
 [[package]]
 name = "tzdata"
 version = "2023.3"
 description = "Provider of IANA time zone data"
+category = "main"
 optional = false
 python-versions = ">=2"
 files = [
@@ -3321,13 +3621,14 @@ files = [
 
 [[package]]
 name = "urllib3"
-version = "2.0.2"
+version = "2.0.4"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "urllib3-2.0.2-py3-none-any.whl", hash = "sha256:d055c2f9d38dc53c808f6fdc8eab7360b6fdbbde02340ed25cfbcd817c62469e"},
-    {file = "urllib3-2.0.2.tar.gz", hash = "sha256:61717a1095d7e155cdb737ac7bb2f4324a858a1e2e6466f6d03ff630ca68d3cc"},
+    {file = "urllib3-2.0.4-py3-none-any.whl", hash = "sha256:de7df1803967d2c2a98e4b11bb7d6bd9210474c46e8a0401514e3a42a75ebde4"},
+    {file = "urllib3-2.0.4.tar.gz", hash = "sha256:8d22f86aae8ef5e410d4f539fde9ce6b2113a001bb4d189e0aed70642d602b11"},
 ]
 
 [package.extras]
@@ -3338,28 +3639,30 @@ zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "virtualenv"
-version = "20.23.0"
+version = "20.24.4"
 description = "Virtual Python Environment builder"
+category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "virtualenv-20.23.0-py3-none-any.whl", hash = "sha256:6abec7670e5802a528357fdc75b26b9f57d5d92f29c5462ba0fbe45feacc685e"},
-    {file = "virtualenv-20.23.0.tar.gz", hash = "sha256:a85caa554ced0c0afbd0d638e7e2d7b5f92d23478d05d17a76daeac8f279f924"},
+    {file = "virtualenv-20.24.4-py3-none-any.whl", hash = "sha256:29c70bb9b88510f6414ac3e55c8b413a1f96239b6b789ca123437d5e892190cb"},
+    {file = "virtualenv-20.24.4.tar.gz", hash = "sha256:772b05bfda7ed3b8ecd16021ca9716273ad9f4467c801f27e83ac73430246dca"},
 ]
 
 [package.dependencies]
-distlib = ">=0.3.6,<1"
-filelock = ">=3.11,<4"
-platformdirs = ">=3.2,<4"
+distlib = ">=0.3.7,<1"
+filelock = ">=3.12.2,<4"
+platformdirs = ">=3.9.1,<4"
 
 [package.extras]
-docs = ["furo (>=2023.3.27)", "proselint (>=0.13)", "sphinx (>=6.1.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=22.12)"]
-test = ["covdefaults (>=2.3)", "coverage (>=7.2.3)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.3.1)", "pytest-env (>=0.8.1)", "pytest-freezegun (>=0.4.2)", "pytest-mock (>=3.10)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=67.7.1)", "time-machine (>=2.9)"]
+docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
+test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"]
 
 [[package]]
 name = "wrapt"
 version = "1.15.0"
 description = "Module for decorators, wrappers and monkey patching."
+category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 files = [
@@ -3444,6 +3747,7 @@ files = [
 name = "xarray"
 version = "2022.12.0"
 description = "N-D labeled arrays and datasets in Python"
+category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -3466,13 +3770,14 @@ viz = ["matplotlib", "nc-time-axis", "seaborn"]
 
 [[package]]
 name = "yamlfix"
-version = "1.9.0"
+version = "1.14.0"
 description = "A simple opionated yaml formatter that keeps your comments!"
+category = "dev"
 optional = false
 python-versions = ">=3.7.2"
 files = [
-    {file = "yamlfix-1.9.0-py3-none-any.whl", hash = "sha256:03d928cab52da392d6ce1b80e8344c22622bc74a899a96fbba90cd23ebd1e427"},
-    {file = "yamlfix-1.9.0.tar.gz", hash = "sha256:dbf0873e1e409fa9e37e32c07ef74c1e93418392b1f952b4b5964adbe17cb402"},
+    {file = "yamlfix-1.14.0-py3-none-any.whl", hash = "sha256:e62d26a6f79bdaf8c2f23aeff7d6eddde4442c40b349c864cf15aa71794d37b1"},
+    {file = "yamlfix-1.14.0.tar.gz", hash = "sha256:1ab4640ae25a693d5ec1de718cd2145a9d7fd3b0094a16d5790b02ff736f87fe"},
 ]
 
 [package.dependencies]
@@ -3484,6 +3789,7 @@ ruyaml = ">=0.91.0"
 name = "yte"
 version = "1.5.1"
 description = "A YAML template engine with Python expressions"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3498,20 +3804,21 @@ pyyaml = ">=6.0,<7.0"
 
 [[package]]
 name = "zipp"
-version = "3.15.0"
+version = "3.16.2"
 description = "Backport of pathlib-compatible object wrapper for zip files"
+category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.15.0-py3-none-any.whl", hash = "sha256:48904fc76a60e542af151aded95726c1a5c34ed43ab4134b597665c86d7ad556"},
-    {file = "zipp-3.15.0.tar.gz", hash = "sha256:112929ad649da941c23de50f356a2b5570c954b65150642bccdd66bf194d224b"},
+    {file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"},
+    {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.8, <3.11"
-content-hash = "af4cdd8722bf8c280f91d39aea6d226628de43bca6ec5adc1cbc84a1f7970ea9"
+content-hash = "4f554ec4530bfe8b0562247093dfa6d5ee95c1d5f5a4fa4fd219980db5a350cb"
diff --git a/pyproject.toml b/pyproject.toml
index 47dda0b7..94a55908 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -17,12 +17,12 @@ packages = [
 
 [tool.poetry.dependencies]
 python = ">=3.8, <3.11"
-snakebids = "^0.8.0"
+snakebids = "^0.9.0"
 nibabel = "^3.2.2"
 nilearn = "^0.10.0"
 numpy = "^1.22.3"
 scipy = "^1.8.0"
-labelmerge = {git = "https://github.com/khanlab/labelmerge.git", rev = "v0.4.4"}
+labelmerge = {git = "https://github.com/khanlab/labelmerge.git", rev = "v0.4.5"}
 matplotlib = "^3.7.1"
 niworkflows = "^1.7.9"
 pygments = "^2.15.1"
@@ -55,12 +55,12 @@ ruff = "ruff --fix scattr"
 ruff-check = "ruff scattr"
 snakefmt = "snakefmt scattr"
 snakefmt-check = "snakefmt --check scattr"
-quality = ["yamlfix", "isort", "black", "ruff", "snakefmt"]
+quality = ["yamlfix", "ruff", "isort", "black", "snakefmt"]
 quality-check = [
+    "ruff-check",
     "yamlfix-check",
     "isort-check",
     "black-check",
-    "ruff-check",
     "snakefmt-check",
 ]
 test = [
diff --git a/scattr/config/snakebids.yml b/scattr/config/snakebids.yml
index 84803222..1277aa7e 100644
--- a/scattr/config/snakebids.yml
+++ b/scattr/config/snakebids.yml
@@ -26,12 +26,12 @@ pybids_inputs:
       extension: ".nii.gz"
       datatype: "anat"
       desc: "brain" # Require a skull-stripped brain
-      # part: "mag"
+      part: ["mag", false]
     wildcards:
       - subject
       - session
       - acquisition
-      # - part
+      - part
       - reconstruction
       - run
   dwi:
@@ -40,13 +40,13 @@ pybids_inputs:
       extension: ".nii.gz"
       datatype: "dwi"
       space: "T1w"
-      # part: "mag"
+      part: ["mag", false]
     wildcards:
       - subject
       - session
       - acquisition
       - direction
-      # - part
+      - part
       - reconstruction
       - run
   mask:
@@ -65,16 +65,15 @@ pybids_inputs:
 # Configuration for the command-line parameters to make available
 # passed on the argparse add_argument()
 parse_args:
-
-#--- core BIDS-app options --- (do not modify below) ---#
+  #--- core BIDS-app options --- (do not modify below) ---#
   bids_dir:
     help: The directory with the input dataset formatted according to the
-          BIDS standard.
+      BIDS standard.
 
   output_dir:
     help: The directory where the output files should be stored. If you are
-          running group level analysis, this folder should be prepopulated
-          with the results of the participant level analysis.
+      running group level analysis, this folder should be prepopulated
+      with the results of the participant level analysis.
 
   analysis_level:
     help: Level of the analysis that will be performed
@@ -82,180 +81,180 @@ parse_args:
 
   --participant_label:
     help: The label(s) of the participant(s) that should be analyzed. The label
-          corresponds to sub-<participant_label> from the BIDS spec (so it does
-          not include "sub-"). If this parameter is not provided, all subjects
-          will be analyzed. Multiple participants can be specified with a space
-          seperated list.
+      corresponds to sub-<participant_label> from the BIDS spec (so it does
+      not include "sub-"). If this parameter is not provided, all subjects
+      will be analyzed. Multiple participants can be specified with a space
+      seperated list.
     nargs: "+"
 
   --exclude_participant_label:
     help: The label(s) of the participant(s) that should be excluded. The label
-          corresponds to sub-<participant_label> from the BIDS spec (so it does
-          not include "sub-"). If this parameter is not provided, all subjects
-          will be analyzed. Multiple participants can be specified with a space
-          sepearated list.
+      corresponds to sub-<participant_label> from the BIDS spec (so it does
+      not include "sub-"). If this parameter is not provided, all subjects
+      will be analyzed. Multiple participants can be specified with a space
+      sepearated list.
     nargs: "+"
-#-----------------------------------------------------#
+  #-----------------------------------------------------#
 
-#--- additional BIDS-app options --- (add in below) --#
+  #--- additional BIDS-app options --- (add in below) --#
   --slurm_tmpdir:
-    help: 'Flag to indicate use of SLURM temporary directory. A temporary 
-          directory is used to improve write speeds of output files on a 
-          networked system. If not used, the workflow will default to system 
-          /tmp directory.'
+    help: "Flag to indicate use of SLURM temporary directory. A temporary
+      directory is used to improve write speeds of output files on a
+      networked system. If not used, the workflow will default to system
+      /tmp directory."
     action: store_true
     default: False
 
   --freesurfer_dir:
-    help: 'The path to the freesurfer directory. If not provided, workflow
-          assumes the directory exists at <output_dir>/freesurfer.'
+    help: "The path to the freesurfer directory. If not provided, workflow
+      assumes the directory exists at <output_dir>/freesurfer."
     nargs: "?"
     type: Path
 
   --dwi_dir:
-    help: 'The path to the directory containing pre-processed dwi data
-          transformed to subject T1w space. If not provided, workflow assumes
-          this data exists in <bids_dir>/<subject>/dwi.'
+    help: "The path to the directory containing pre-processed dwi data
+      transformed to subject T1w space. If not provided, workflow assumes
+      this data exists in <bids_dir>/<subject>/dwi."
     nargs: "?"
     type: Path
 
   --responsemean_dir:
-    help: 'The path to the directory containing average response functions. If 
-          not provided, one will be computed from the subjects in the input
-          directory.'
+    help: "The path to the directory containing average response functions. If
+      not provided, one will be computed from the subjects in the input
+      directory."
     nargs: "?"
     type: Path
 
   --responsemean_ses:
-    help: 'The session used to compute the average response function. If 
-          multiple are available in the dataset, it is HIGHLY RECOMMENDED to 
-          set this to a specific session. If not provided, the average response 
-          function will be computed with all possible sessions.'
+    help: "The session used to compute the average response function. If
+      multiple are available in the dataset, it is HIGHLY RECOMMENDED to
+      set this to a specific session. If not provided, the average response
+      function will be computed with all possible sessions."
     nargs: "?"
 
   --fs_license:
-    help: 'Path to Freesurfer license file. If not provided, workflow will check
-          FS_LICENSE environment variable for one.'
+    help: "Path to Freesurfer license file. If not provided, workflow will check
+      FS_LICENSE environment variable for one."
     nargs: "?"
     type: Path
 
   --labelmerge_base_dir:
-    help: 'BIDS directory containing base input labelmaps.'
+    help: "BIDS directory containing base input labelmaps."
     nargs: "?"
     type: Path
 
   --labelmerge_overlay_dir:
-    help: 'BIDS directory containing overlay input labelmaps.'
+    help: "BIDS directory containing overlay input labelmaps."
     nargs: "?"
     type: Path
 
   --labelmerge_base_desc:
-    help: 'Description entity for base labelmaps used in labelmerge. By default,
-          uses ZonaBB entity as intended in the subcortical connectome workflow
-          (default: ZonaBB).'
+    help: "Description entity for base labelmaps used in labelmerge. By default,
+      uses ZonaBB entity as intended in the subcortical connectome workflow
+      (default: ZonaBB)."
     nargs: "?"
     default: "ZonaBB"
 
   --labelmerge_overlay_desc:
-    help: 'Description entity for overlay labelmaps used in labelmerge. By 
-          default, uses FreesurferThal value as intended in the subcortical 
-          connectome workflow (default: FreesurferThal).'
+    help: "Description entity for overlay labelmaps used in labelmerge. By
+      default, uses FreesurferThal value as intended in the subcortical
+      connectome workflow (default: FreesurferThal)."
     nargs: "?"
     default: "FreesurferThal"
 
   --labelmerge_base_drops:
-    help: 'Space-separated list of indices to drop from the base image used in
-          labelmerge. By default, will drop the thalamus labels for intended use
-          in the subcortical connectome workflow (default: 15 16).'
+    help: "Space-separated list of indices to drop from the base image used in
+      labelmerge. By default, will drop the thalamus labels for intended use
+      in the subcortical connectome workflow (default: 15 16)."
     nargs: "*"
     default: 15 16
 
   --labelmerge_overlay_drops:
-    help: 'Space-separated list of indices to drop from the overlay image used 
-          in labelmerge.'
+    help: "Space-separated list of indices to drop from the overlay image used
+      in labelmerge."
     nargs: "*"
 
   --labelmerge_base_exceptions:
-    help: 'Space-separated list of integer labels from the base labelmap to 
-          keep over overlay labels at corresponding voxels.'
+    help: "Space-separated list of integer labels from the base labelmap to
+      keep over overlay labels at corresponding voxels."
     nargs: "*"
 
   --labelmerge_overlay_exceptions:
-    help: 'Space-separated list of integer labels from the overlay labelmap to 
-          be overwritten by base labels at corresponding voxels.'
+    help: "Space-separated list of integer labels from the overlay labelmap to
+      be overwritten by base labels at corresponding voxels."
     nargs: "*"
 
   --skip_labelmerge:
-    help: 'Skip the merging step, using only the base labelmap to identify 
-          structures of interest to target.'
+    help: "Skip the merging step, using only the base labelmap to identify
+      structures of interest to target."
     action: store_true
     default: False
 
   --skip_brainstem:
-    help: 'By default, the worklow adds the brainstem to the combined output of
-          labelmerge. Use of this flag will disable the addition of the 
-          brainstem label.'
+    help: "By default, the worklow adds the brainstem to the combined output of
+      labelmerge. Use of this flag will disable the addition of the
+      brainstem label."
     action: store_true
     default: False
 
   --skip_thal_seg:
-    help: 'By default, the workflow performs segmentation of the thalamus on 
-          (previously processed) Freesurfer outputs. Use of this flag will skip
-          the thalamus segmentation step.'
+    help: "By default, the workflow performs segmentation of the thalamus on
+      (previously processed) Freesurfer outputs. Use of this flag will skip
+      the thalamus segmentation step."
     action: store_true
     default: False
 
   --bzero_thresh:
-    help: 'Set the threshold for a shell to be considered b=0. By default, this
-          value is set to 10'
+    help: "Set the threshold for a shell to be considered b=0. By default, this
+      value is set to 10"
     nargs: "?"
     default: 10
 
   --shells:
-    help: '(Mrtrix3) specify one or more b-values to use during processing, as
-          a space-separated list of the desired approximate b-values (b-values
-          are clustered to allow for small deviations). Note that some
-          commands are incompatible with multiple b-values, and will report an
-          error if more than one b-value is provided.
-          WARNING: note that, even though b=0 volumes are never referred to as
-          shells in the literature, they still have to be explicitly included
-          in the list of b-values as provided to the -shell option! Several
-          algorithms which include the b=0 volumes in their computations may
-          otherwise return an undesired reuslt.'
+    help: "(Mrtrix3) specify one or more b-values to use during processing, as
+      a space-separated list of the desired approximate b-values (b-values
+      are clustered to allow for small deviations). Note that some
+      commands are incompatible with multiple b-values, and will report an
+      error if more than one b-value is provided.
+      WARNING: note that, even though b=0 volumes are never referred to as
+      shells in the literature, they still have to be explicitly included
+      in the list of b-values as provided to the -shell option! Several
+      algorithms which include the b=0 volumes in their computations may
+      otherwise return an undesired reuslt."
     nargs: "*"
 
   --lmax:
-    help: '(Mrtrix3) the maximum spherical harmonic order for the output
-          FOD(s). For algorithms with multiple outputs, this should be
-          provided as a space-sperated list of integers, one for each output
-          image; for single-output algorithms, only a single integer
-          should be provided. If omitted, commands will use the lmax of the
-          corresponding response function (i.e. based on its number of
-          coefficients), up to a maximum of 8.'
+    help: "(Mrtrix3) the maximum spherical harmonic order for the output
+      FOD(s). For algorithms with multiple outputs, this should be
+      provided as a space-sperated list of integers, one for each output
+      image; for single-output algorithms, only a single integer
+      should be provided. If omitted, commands will use the lmax of the
+      corresponding response function (i.e. based on its number of
+      coefficients), up to a maximum of 8."
     nargs: "*"
 
   --step:
-    help: '(Mrtrix3) set the step size of the algorithm in mm. Should set to
-          4 steps per voxel (e.g. 1/4 * voxel size) in order to sample more
-          frequently in compact region. (default: 0.35mm)'
+    help: "(Mrtrix3) set the step size of the algorithm in mm. Should set to
+      4 steps per voxel (e.g. 1/4 * voxel size) in order to sample more
+      frequently in compact region. (default: 0.35mm)"
     default: 0.35
 
   --sl_count:
-    help: '(Mrtrix3) set the desired number of streamlines to be selected,
-          after all selection criteria has been applied (i.e.
-          inclusion/exclusion ROIS, min/max length, etc. Streamlines will be
-          seeded until this number of streamlines have been selected, or the
-          maximum allowed number of seeds has been exceeded. Set to zero to
-          disable, which will result in streamlines being seeded until
-          the maximum allowed number of seeds has been reached.
-          (default: 20,000,000 streamlines)'
+    help: "(Mrtrix3) set the desired number of streamlines to be selected,
+      after all selection criteria has been applied (i.e.
+      inclusion/exclusion ROIS, min/max length, etc. Streamlines will be
+      seeded until this number of streamlines have been selected, or the
+      maximum allowed number of seeds has been exceeded. Set to zero to
+      disable, which will result in streamlines being seeded until
+      the maximum allowed number of seeds has been reached.
+      (default: 20,000,000 streamlines)"
     default: 20000000
 
   --radial_search:
-    help: '(Mrtrix3) perform a radial search from each streamline endpoint to
-          locate the nearest node. Argument is the maximum radius in mm; if no
-          node is found within this radius, the streamline endpoint is not
-          assigned to any node. (default: 1.5mm)'
+    help: "(Mrtrix3) perform a radial search from each streamline endpoint to
+      locate the nearest node. Argument is the maximum radius in mm; if no
+      node is found within this radius, the streamline endpoint is not
+      assigned to any node. (default: 1.5mm)"
     default: 1.5
 #-----------------------------------------------------#
 
@@ -264,17 +263,17 @@ parse_args:
 Space: MNI152NLin6Asym
 
 zona_bb_subcortex:
-  tsv: 'resources/zona_bb_subcortex/desc-ZonaBB_dseg.tsv'
+  tsv: "resources/zona_bb_subcortex/desc-ZonaBB_dseg.tsv"
   MNI152NLin6Asym:
-    dir: 'resources/zona_bb_subcortex/MNI152NLin6Asym/'
-    T1w: 'tpl-MNI152NLin6Asym_res-04_desc-brain_T1w.nii.gz'
-    seg: 'sub-SNSX32NLin2020Asym_space-MNI152NLin6Asym_desc-ZonaBB_dseg.nii.gz'
+    dir: "resources/zona_bb_subcortex/MNI152NLin6Asym/"
+    T1w: "tpl-MNI152NLin6Asym_res-04_desc-brain_T1w.nii.gz"
+    seg: "sub-SNSX32NLin2020Asym_space-MNI152NLin6Asym_desc-ZonaBB_dseg.nii.gz"
   MNI152NLin2009bAsym:
-    dir: 'resources/zona_bb_subcortex/MNI152NLin2009bAsym/'
-    seg: 'sub-SNSX32NLin2020Asym_space-MNI152NLin2009bAsym_desc-ZonaBB_dseg.nii.gz'
+    dir: "resources/zona_bb_subcortex/MNI152NLin2009bAsym/"
+    seg: "sub-SNSX32NLin2020Asym_space-MNI152NLin2009bAsym_desc-ZonaBB_dseg.nii.gz"
 
 freesurfer:
-  tsv: 'resources/freesurfer/desc-FreesurferThal_dseg.tsv'
+  tsv: "resources/freesurfer/desc-FreesurferThal_dseg.tsv"
 
 # Containers
 singularity: