What's new

Release notes

v1.15.0

• Improve generic parser:
  • New automatic full directory option to process all the present files in the directory
  • Compatible with .gz and .bz2 compressed files
• Improve resilience of statistics module upon extreme cases such as empty samples

v1.14.1

• Solve problems with GH Actions so that CI/CD is working fine again.
• Improve rextract to deal with some simulated reads

v.14.0

• Addition of new tool refafilt for processing databases contained in —huge— fasta files (such as NCBI BLAST nt), so:
  • provide filters by minimum and/or maximum sequence length to separate those sequences,
  • correct issue when header of fasta sequence is multiplexed meaning such sequence is redundant in the database
• Correct bug and improve statistics and messages

v1.13.2

• Correct bug in scoring introduced in v1.13.0

v1.13.1

• Update after NCBI Taxonomy change and upgrade to 2024

v1.13.0

• Important reductions in the size of the generated HTML, now < 2/3 of old size
• LOGLENGTH scoring: switch from geometric to arithmetic averaging
• retest: use pandas.testing.assert_frame_equal for df comparisons
• Relocation of a few krona-related constants