From 2cf4acba8d9e0b03f8dadf57008beb171ee72298 Mon Sep 17 00:00:00 2001
From: Celine Pelletier <cpelletier@ferlab.bio>
Date: Tue, 17 Oct 2023 20:45:58 -0400
Subject: [PATCH] feat: SJIP-569 filter to keep only available biospecimen for
 request report

---
 .../biospecimen-request/generateBiospecimenRequestFiles.ts    | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/src/reports/biospecimen-request/generateBiospecimenRequestFiles.ts b/src/reports/biospecimen-request/generateBiospecimenRequestFiles.ts
index 4be5870..5fb77e3 100644
--- a/src/reports/biospecimen-request/generateBiospecimenRequestFiles.ts
+++ b/src/reports/biospecimen-request/generateBiospecimenRequestFiles.ts
@@ -12,6 +12,7 @@ import { contact, generateStudyTab, wantedFields } from './config';
 import { resolveSetsInSqon } from '../../utils/sqonUtils';
 import { SheetConfig } from '../types';
 import generateTxtFile from '../utils/generateTxtFile';
+import { addConditionAvailableInSqon } from '../utils/getAvailableBiospecimensFromSqon';
 
 /**
  * Generate and write locally.
@@ -102,7 +103,8 @@ const makeReportQuery = async (
 ) => {
     const nestedFields = getNestedFields(extendedConfig);
     const newSqon = await resolveSetsInSqon(sqon, userId, accessToken);
-    const query = buildQuery({ nestedFields, filters: newSqon });
+    const newSqonForAvailableOnly = addConditionAvailableInSqon(newSqon);
+    const query = buildQuery({ nestedFields, filters: newSqonForAvailableOnly });
 
     return {
         query,