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feat: SJIP-569 filter to keep only available biospecimen for request report #99

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merged 1 commit into from
Oct 18, 2023
Merged

feat: SJIP-569 filter to keep only available biospecimen for request report #99

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4 changes: 3 additions & 1 deletion src/reports/biospecimen-request/generateBiospecimenRequestFiles.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,7 @@ import { contact, generateStudyTab, wantedFields } from './config';
import { resolveSetsInSqon } from '../../utils/sqonUtils';
import { SheetConfig } from '../types';
import generateTxtFile from '../utils/generateTxtFile';
import { addConditionAvailableInSqon } from '../utils/getAvailableBiospecimensFromSqon';

/**
* Generate and write locally.
Expand Down Expand Up @@ -102,7 +103,8 @@ const makeReportQuery = async (
) => {
const nestedFields = getNestedFields(extendedConfig);
const newSqon = await resolveSetsInSqon(sqon, userId, accessToken);
const query = buildQuery({ nestedFields, filters: newSqon });
const newSqonForAvailableOnly = addConditionAvailableInSqon(newSqon);
const query = buildQuery({ nestedFields, filters: newSqonForAvailableOnly });

return {
query,
Expand Down