update_docker_tables.yml

name: Update Docker Tables

on: [pull_request]

permissions:
  contents: write
  pull-requests: write

jobs:
  update-tables:
    name: Update Docker Tables
    runs-on: ubuntu-22.04
    steps:
      - id: checkout
        uses: actions/checkout@v3
        name: Checkout Repo
        with:
          ref: ${{ github.head_ref }}
          submodules: true
      - id: make-somatic-table
        name: Make Docker Table for Somatic Workflow
        run: |
          python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_somatic.md workflow/kfdrc-somatic-variant-workflow.cwl
      - id: make-consensus-table
        name: Make Docker Table for Consensus Workflow
        run: |
          python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_consensus.md workflow/kfdrc_consensus_calling.cwl
      - id: cpr
        name: Create Pull Request
        uses: peter-evans/create-pull-request@v5
        with:
          commit-message: update docker table
          title: Update Production WF Docker Tables
          body: |
            Automated changes by [create-pull-request](https://github.com/peter-evans/create-pull-request) GitHub action.

            Docker tables for production workflows now have most up-to-date and complete list of Dockers.
          delete-branch: true
          branch: ${{ github.head_ref }}-adjust-dockers
          labels: bix-dev