add lsd2 to dockerfile

ktmeaton · Sep 7, 2021 · 11e2697 · 11e2697
1 parent 4c7f04a
commit 11e2697
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/workflow/envs/merge/Dockerfile b/workflow/envs/merge/Dockerfile
@@ -20,6 +20,11 @@ RUN conda install -c conda-forge mamba \
     && mamba clean -a \
     && echo "source activate plague-phylogeography" > ~/.bashrc;
 
+# Install lsd2
+RUN wget https://github.com/tothuhien/lsd2/releases/download/v1.9.9/lsd2_unix \
+    && mv lsd2_unix /opt/conda/envs/plague-phylogeography/bin/lsd2;
+
+
 ENV PATH /opt/conda/envs/plague-phylogeography/bin:$PATH
 ENV IN_DOCKER_CONTAINER Yes