test untracking auto docs

ktmeaton · Aug 14, 2020 · 14763ac · 14763ac
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diff --git a/.github/workflows/pipeline_sra.yaml b/.github/workflows/pipeline_sra.yaml
@@ -61,12 +61,6 @@ jobs:
         with:
           path: /home/runner/miniconda/envs/plague-phylogeography-0.1.4dev
           key: plague-phylogeography-env-${{ runner.os }}-${{ hashFiles('environment.yaml') }}
-
-      - name: cache nextstrain env
-        uses: actions/cache@v2
-        with:
-          path: /home/runner/miniconda/envs/nextstrain-8.0.0
-          key: nextstrain-env-${{ runner.os }}-${{ hashFiles('config/nextstrain.yaml') }}
       #------------------------------------------------------------------------#
       # Check conda environments
       - name: check cache

diff --git a/.gitignore b/.gitignore
@@ -4,6 +4,7 @@ test*/*
 sra/*
 docs/_build/*
 docs/README.rst
+docs/process/process_all.rst
 .nextflow*
 ncbimeta.yaml*
 pipeline.pdf*

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -48,6 +48,17 @@ and this project "attempts" to adhere to [Semantic Versioning](http://semver.org
 - rename environment phylo-env to plague-phylogeography-0.1.4dev
 - update ncbimeta dependency from 0.6.5 to 0.6.6
 
+### Removed
+
+- don't track docs output
+
+```bash
+git rm --cached -- docs/README.rst docs/process/process_all.rst
+git add -u .
+git commit
+git push
+```
+
 ## [v0.1.3] - 2020-05-28 - DHSI2020 Exhibit
 
 Release for the [DHSI2020 Conference and Colloquium](https://dhsi.org/dhsi-2020/#colloquium) Exhibit.

diff --git a/docs/README.rst b/docs/README.rst