greater complexity to profiles

ktmeaton · Oct 2, 2020 · 1636f8e · 1636f8e
1 parent 85d1661
commit 1636f8e
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diff --git a/profiles/gh-actions/config.yaml b/profiles/gh-actions/config.yaml
@@ -1,3 +1,15 @@
+# resources
 cores : "2"
 default-resources: [cpus=1, mem_mb=2000, time_min=60]
 resources: [cpus=2, mem_mb=6000, load=100]
+
+# system config
+restart-times: 1
+latency-wait: 60
+use-conda: True
+conda-frontend: mamba
+rerun-incomplete: True
+printshellcmds: False
+
+# Slack integration
+log-handler-script: workflow/scripts/slack_log.py
diff --git a/profiles/graham/config.yaml b/profiles/graham/config.yaml
@@ -1,3 +1,21 @@
+# resources
 cores : "4"
 default-resources: [cpus=1, mem_mb=2000, time_min=60]
 resources: [cpus=4, mem_mb=4000, load=100]
+
+# system config
+restart-times: 1
+latency-wait: 60
+use-conda: True
+conda-frontend: mamba
+rerun-incomplete: True
+printshellcmds: False
+
+# system paths
+shadow-prefix: /home/keaton/projects/def-briang/keaton/plague-phylogeography
+
+# Slack integration
+log-handler-script: workflow/scripts/slack_log.py
+
+# slurm execution
+cluster: "sbatch -p normal -t {resources.time_min} --mem={resources.mem_mb} -c {resources.cpus} -o {resources.shadow_prefix}/workflow/logs_slurm/{rule}_{wildcards} -e {resources.shadow_prefix}/workflow/logs_slurm/{rule}_{wildcards}"