make sure conda activates in plot

ktmeaton · Oct 9, 2020 · 2888e3f · 2888e3f
1 parent 85235e1
commit 2888e3f
Showing 1 changed file with 5 additions and 4 deletions.
diff --git a/.github/workflows/docker.yaml b/.github/workflows/docker.yaml
@@ -40,15 +40,16 @@ jobs:
             *.yaml
       #------------------------------------------------------------------------#
       # Plot environment
-      - name: build docker image
+      #- name: build docker image
       #  if: contains(${{ steps.git-diff.outputs.diff }}, "workflow/envs/plot/plot.yaml") || contains(${{ steps.git-diff.outputs.diff }}, "workflow/envs/plot/Dockerfile")
-        run:
-          cd workflow/envs/plot;
-          docker build --no-cache . -t ktmeaton/plague-phylogeography:plot;
+      #  run:
+      #    cd workflow/envs/plot;
+      #    docker build --no-cache . -t ktmeaton/plague-phylogeography:plot;
 
       - name: push to Docker Hub
         uses: elgohr/Publish-Docker-Github-Action@master
         with:
           name: ktmeaton/plague-phylogeography:plot
           username: ${{ secrets.DOCKERHUB_USERNAME }}
           password: ${{ secrets.DOCKERHUB_PASSWORD }}
+          dockerfile: workflow/envs/plot/Dockerfile