fix results_dir for download

ktmeaton · Sep 23, 2020 · 2c83fbe · 2c83fbe
1 parent ad7606d
commit 2c83fbe
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflow/rules/download.smk b/workflow/rules/download.smk
@@ -9,9 +9,9 @@ rule download_fna:
   """
     message: "Downloading and decompressing fasta file {wildcards.sample}."
     input:
-        '{{results_dir}}/sqlite_import/{download_dir}.txt'
+        results_dir + "/sqlite_import/{download_dir}.txt"
     output:
-        '{{results_dir}}/{download_dir}/{sample}.fna'
+        results_dir + "{download_dir}/{sample}.fna"
     run:
         for file in input:
             with open(file) as temp_file: